Tools for Assessing Clustering R package ClustAssess version 1.1.0 A set of tools for evaluating clustering robustness using proportion of ambiguously clustered pairs (Senbabaoglu et al. (2014) <doi:10.1038/srep06207>), as well as similarity across methods and method stability using element-centric clustering comparison (Gates et al. (2019) <doi:10.1038/s41598-019-44892-y>). Additionally, this package enables stability-based parameter assessment for graph-based clustering pipelines typical in single-cell data analysis. Software Depends: R (>= 4.0.0), methods, stats Imports: dplyr, DT, fastcluster, foreach, glue, Gmedian, ggnewscale, ggplot2, ggrastr, ggrepel, ggtext, gprofiler2, igraph, jsonlite, leiden, Matrix (>= 1.5.0), matrixStats, progress, stringr, paletteer, plotly, qualpalr, RANN, reshape2, rlang, Seurat, shiny, shinyjs, shinyLP, shinyWidgets, utils, uwot, vioplot LinkingTo: Rcpp, RcppEigen Suggests: BiocManager, colourpicker, ComplexHeatmap, data.table, DelayedMatrixStats, devtools, doParallel, leidenbase, monocle3, patchwork, ragg, reticulate, rhdf5, RhpcBLASctl, rmarkdown, scales, SeuratObject, SharedObject, styler, testthat (>= 3.0.0) Andi Munteanu <am3019@cam.ac.uk> Comprehensive R Archive Network (CRAN) Andi Munteanu [aut, cre], Arash Shahsavari [aut], Rafael Kollyfas [ctb], Miguel Larraz Lopez de Novales [aut], Liviu Ciortuz [ctb], Irina Mohorianu [aut] MIT + file LICENSE (https://CRAN.R-project.org/package=ClustAssess/LICENSE) 2025-05-27 application/tgz https://CRAN.R-project.org/package=ClustAssess doi:10.32614/CRAN.package.ClustAssess