Comparative Analysis with Annotation-Based Genomic Components R package CALANGO version 1.0.20 CRAN Task View: Phylogenetics (https://CRAN.R-project.org/view=Phylogenetics) A first-principle, phylogeny-aware comparative genomics tool for investigating associations between terms used to annotate genomic components (e.g., Pfam IDs, Gene Ontology terms,) with quantitative or rank variables such as number of cell types, genome size, or density of specific genomic elements. See the project website for more information, documentation and examples, and <doi:10.1016/j.patter.2023.100728> for the full paper. Software Depends: R (>= 3.6.0) Imports: assertthat (>= 0.2.1), pbmcapply (>= 1.5.0), ape (>= 5.3.0), rmarkdown (>= 2.1.0), nlme (>= 3.1.0), BiocManager (>= 1.30.10), dendextend (>= 1.15.2), heatmaply (>= 1.1.0), ggplot2 (>= 2.3.2), plotly (>= 4.9.2), DT (>= 0.13), htmltools (>= 0.5.0), htmlwidgets (>= 1.5.1), pkgdown (>= 1.5.1), knitr (>= 1.28) Suggests: AnnotationDbi, KEGGREST, GO.db Felipe Campelo <fcampelo@gmail.com> Comprehensive R Archive Network (CRAN) Francisco Lobo [aut], Felipe Campelo [aut, cre], Jorge Augusto Hongo [aut], Giovanni Marques de Castro [aut], Gabriel Almeida [sad, dnc] GPL-2 2024-09-05 application/tgz https://CRAN.R-project.org/package=CALANGO doi:10.32614/CRAN.package.CALANGO en-US