High-Performance Open-Source Archive
Last updated on 2026-06-14 05:50:24 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.5-4 | 12.44 | 62.69 | 75.13 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.5-4 | 7.69 | 51.13 | 58.82 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.5-4 | 18.00 | 103.99 | 121.99 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.5-4 | 19.00 | 106.56 | 125.56 | OK | |
| r-devel-windows-x86_64 | 0.5-4 | 13.00 | 151.00 | 164.00 | OK | |
| r-patched-linux-x86_64 | 0.5-4 | 11.06 | 59.59 | 70.65 | OK | |
| r-release-linux-x86_64 | 0.5-4 | 11.19 | 54.84 | 66.03 | ERROR | |
| r-release-macos-arm64 | 0.5-4 | 3.00 | 25.00 | 28.00 | OK | |
| r-release-macos-x86_64 | 0.5-4 | 8.00 | 131.00 | 139.00 | OK | |
| r-release-windows-x86_64 | 0.5-4 | 14.00 | 152.00 | 166.00 | OK | |
| r-oldrel-macos-arm64 | 0.5-4 | 2.00 | 41.00 | 43.00 | OK | |
| r-oldrel-macos-x86_64 | 0.5-4 | 8.00 | 135.00 | 143.00 | OK | |
| r-oldrel-windows-x86_64 | 0.5-4 | 16.00 | 152.00 | 168.00 | OK |
Version: 0.5-4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘lmSubsets.Rnw’ using Sweave
--- finished re-building ‘lmSubsets.Rnw’
make[1]: Entering directory '/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/lmSubsets.Rcheck/vign_test/lmSubsets/vignettes'
pdflatex --shell-escape lmSubsets
This is pdfTeX, Version 3.141592653-2.6-1.40.29 (TeX Live 2026/Debian) (preloaded format=pdflatex)
\write18 enabled.
entering extended mode
(./lmSubsets.tex
LaTeX2e <2025-11-01>
L3 programming layer <2026-05-15>
(/home/hornik/tmp/R.check/r-release-gcc/Work/build/share/texmf/tex/latex/jss.cl
s
Document Class: jss 2023/03/05 3.4 jss class by Achim Zeileis
(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
Document Class: article 2025/01/22 v1.4n Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/size11.clo))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))
(/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty))
(/usr/share/texmf/tex/latex/lm/lmodern.sty)
(/usr/share/texlive/texmf-dist/tex/latex/natbib/natbib.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))))
(/usr/share/texlive/texmf-dist/tex/latex/auto-pst-pdf/auto-pst-pdf.sty
(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifpdf.sty)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex)))
(/usr/share/texlive/texmf-dist/tex/latex/ifplatform/ifplatform.sty
(/usr/share/texlive/texmf-dist/tex/latex/tools/shellesc.sty)
(/usr/share/texlive/texmf-dist/tex/generic/catchfile/catchfile.sty
(/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty))
(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifluatex.sty) (./lmSubsets.w18
))
-------------------------------------------------
auto-pst-pdf: Auxiliary LaTeX compilation
-------------------------------------------------
This is pdfTeX, Version 3.141592653-2.6-1.40.29 (TeX Live 2026/Debian) (preloaded format=latex)
entering extended mode
-------------------------------------------------
auto-pst-pdf: End auxiliary LaTeX compilation
-------------------------------------------------
Package auto-pst-pdf Warning:
Creation of lmSubsets-autopp.dvi failed.
This warning occured on input line 128.
Package auto-pst-pdf Warning:
Could not create lmSubsets-pics.pdf. Auxiliary files not deleted.
This warning occured on input line 128.
(/usr/share/texlive/texmf-dist/tex/latex/pst-pdf/pst-pdf.sty
(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifxetex.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty)
(/usr/share/texlive/texmf-dist/tex/generic/luatex85/luatex85.sty)
(/usr/share/texlive/texmf-dist/tex/latex/pstricks/pstricks.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/pst-xkey.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pstricks.tex
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-fp.tex
`pst-fp' v0.06, 2020/11/20 (hv))
(/usr/share/texlive/texmf-dist/tex/latex/pgf/utilities/pgffor.sty
(/usr/share/texlive/texmf-dist/tex/latex/pgf/utilities/pgfrcs.sty
(/usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgfutil-common.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgfutil-latex.def)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgfrcs.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/pgf.revision.tex)))
(/usr/share/texlive/texmf-dist/tex/latex/pgf/utilities/pgfkeys.sty
(/usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgfkeys.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgfkeyslibraryfiltered
.code.tex))) (/usr/share/texlive/texmf-dist/tex/latex/pgf/math/pgfmath.sty
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmath.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathutil.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathparser.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.basic.code
.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.trigonomet
ric.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.random.cod
e.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.comparison
.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.base.code.
tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.round.code
.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.misc.code.
tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.integerari
thmetics.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathcalc.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfloat.code.tex)))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgffor.code.tex))
`PSTricks' v3.22A <2025/12/13> (tvz,hv)
--- We are running latex or xelatex ---
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pstricks.con)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pstricks-color.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pstricks-arrows.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pstricks-dots.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-code-grid.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-code-box.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-code-arc.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-code-circle_ellipse.tex
) (/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-code-ref_rot.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-code-put.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-code-pspicture.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pstricks.con))
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-fp.tex
`pst-fp' v0.06, 2020/11/20 (hv)))
(/usr/share/texmf/tex/latex/preview/preview.sty)
(/usr/share/texlive/texmf-dist/tex/latex/environ/environ.sty
(/usr/share/texlive/texmf-dist/tex/latex/trimspaces/trimspaces.sty))))
(/usr/share/texlive/texmf-dist/tex/generic/thumbpdf/thumbpdf.sty)
(/usr/share/texlive/texmf-dist/tex/latex/mathtools/mathtools.sty
(/usr/share/texlive/texmf-dist/tex/latex/tools/calc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/mathtools/mhsetup.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/bbm-macros/bbm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/pgf/frontendlayer/tikz.sty
(/usr/share/texlive/texmf-dist/tex/latex/pgf/basiclayer/pgf.sty
(/usr/share/texlive/texmf-dist/tex/latex/pgf/basiclayer/pgfcore.sty
(/usr/share/texlive/texmf-dist/tex/latex/pgf/systemlayer/pgfsys.sty
(/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgf.cfg)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-pdftex.def
(/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-common-pdf.de
f)))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsyssoftpath.code.
tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsysprotocol.code.
tex))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcore.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfint.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepoints.code.te
x)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathconstruct.
code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathusage.code
.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorescopes.code.te
x)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoregraphicstate.c
ode.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoretransformation
s.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorequick.code.tex
)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreobjects.code.t
ex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathprocessing
.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorearrows.code.te
x)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreshade.code.tex
)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreimage.code.tex
)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreexternal.code.
tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorelayers.code.te
x)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoretransparency.c
ode.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepatterns.code.
tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorerdf.code.tex))
)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/modules/pgfmoduleshapes.code.tex
) (/usr/share/texlive/texmf-dist/tex/generic/pgf/modules/pgfmoduleplot.code.tex
)
(/usr/share/texlive/texmf-dist/tex/latex/pgf/compatibility/pgfcomp-version-0-65
.sty)
(/usr/share/texlive/texmf-dist/tex/latex/pgf/compatibility/pgfcomp-version-1-18
.sty))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/tikz.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/pgflibraryplothandlers
.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/modules/pgfmodulematrix.code.tex
)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibrarytopaths.code.tex)))
(/usr/share/texlive/texmf-dist/tex/latex/forest/forest.sty
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryshapes.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryshapes.geometric.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshape
s.geometric.code.tex))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryshapes.misc.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshape
s.misc.code.tex))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryshapes.symbols.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshape
s.symbols.code.tex))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryshapes.arrows.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshape
s.arrows.code.tex))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryshapes.callouts.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshape
s.callouts.code.tex))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryshapes.multipart.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshape
s.multipart.code.tex)))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryfit.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibrarycalc.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/pgflibraryintersection
s.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/pgflibraryfpu.code.tex
)) (/usr/share/texlive/texmf-dist/tex/latex/pgfopts/pgfopts.sty)
(/usr/share/texlive/texmf-dist/tex/latex/elocalloc/elocalloc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty
(/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)))
(/usr/share/texlive/texmf-dist/tex/latex/inlinedef/inlinedef.sty))
(/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)
(/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty)
(/usr/share/texlive/texmf-dist/tex/latex/caption/subcaption.sty
(/usr/share/texlive/texmf-dist/tex/latex/caption/caption.sty
(/usr/share/texlive/texmf-dist/tex/latex/caption/caption3.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/threeparttable/threeparttable.sty)
(/home/hornik/tmp/R.check/r-release-gcc/Work/build/share/texmf/tex/latex/Sweave
.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texmf/tex/latex/lm/t1lmr.fd))
Environment Schunk is already defined, stay with former definition)
No file lmSubsets.aux.
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texmf/tex/latex/lm/t1lmss.fd)
(/usr/share/texmf/tex/latex/lm/ot1lmr.fd)
(/usr/share/texmf/tex/latex/lm/omllmm.fd)
(/usr/share/texmf/tex/latex/lm/omslmsy.fd)
(/usr/share/texmf/tex/latex/lm/omxlmex.fd)
Package natbib Warning: Citation `hofmann:20' on page 1 undefined on input line
122.
(/usr/share/texmf/tex/latex/lm/t1lmtt.fd)
Preview: Fontsize 10.95pt
Preview: PDFoutput 1
Package natbib Warning: Citation `clarke:81' on page 1 undefined on input line
135.
Package natbib Warning: Citation `hastie:01' on page 1 undefined on input line
135.
Package natbib Warning: Citation `miller:02' on page 1 undefined on input line
139.
(/usr/share/texlive/texmf-dist/tex/latex/bbm-macros/ubbm.fd)
Package natbib Warning: Citation `golub:96' on page 1 undefined on input line 1
67.
[1
Non-PDF special ignored!
<special> ps: /pssetRGBcolor /setrgbcolor load def /pssetCMYKcolor /setcmyk...
Non-PDF special ignored!
<special> ps:tx@Dict begin gsave STV CP T /ps@rot 0 def grestore end
Non-PDF special ignored!
<special> ps:tx@Dict begin gsave STV CP T /ps@refangle 0. def grestore e...
{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texmf/fonts/enc/
dvips/lm/lm-ec.enc}{/usr/share/texmf/fonts/enc/dvips/lm/lm-mathsy.enc}{/usr/sha
re/texmf/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texmf/fonts/enc/dvips/lm/
lm-rm.enc}]
Package natbib Warning: Citation `miller:02' on page 2 undefined on input line
205.
LaTeX Warning: Reference `eq:best_subset' on page 2 undefined on input line 206
.
LaTeX Warning: Reference `eq:all_subsets' on page 2 undefined on input line 224
.
LaTeX Warning: Reference `eq:best_subset' on page 2 undefined on input line 225
.
LaTeX Warning: Reference `eq:all_subsets' on page 2 undefined on input line 236
.
LaTeX Warning: Reference `eq:best_subset' on page 2 undefined on input line 245
.
Package natbib Warning: Citation `goldberg:89' on page 2 undefined on input lin
e 258.
Package natbib Warning: Citation `otten:89' on page 2 undefined on input line 2
58.
Package natbib Warning: Citation `leaps' on page 2 undefined on input line 263.
Package natbib Warning: Citation `miller:02' on page 2 undefined on input line
265.
Package natbib Warning: Citation `bestglm' on page 2 undefined on input line 26
6.
Package natbib Warning: Citation `BeSS' on page 2 undefined on input line 269.
Package natbib Warning: Citation `subselect' on page 2 undefined on input line
269.
Package natbib Warning: Citation `glmulti' on page 2 undefined on input line 27
2.
Package natbib Warning: Citation `wolters:15' on page 2 undefined on input line
275.
Package natbib Warning: Citation `friedman:10' on page 2 undefined on input lin
e 279.
Overfull \hbox (5.47499pt too wide) has occurred while \output is active
\T1/lmr/m/n/10.95 2 []
[2]
Package natbib Warning: Citation `lmSubsets' on page 3 undefined on input line
281.
LaTeX Warning: Reference `eq:best_subset' on page 3 undefined on input line 283
.
LaTeX Warning: Reference `eq:all_subsets' on page 3 undefined on input line 284
.
Package natbib Warning: Citation `gatu:06' on page 3 undefined on input line 28
5.
Package natbib Warning: Citation `hofmann:07' on page 3 undefined on input line
285.
Package natbib Warning: Citation `hofmann:10' on page 3 undefined on input line
288.
Package natbib Warning: Citation `R' on page 3 undefined on input line 294.
LaTeX Warning: Reference `sec:comput' on page 3 undefined on input line 297.
LaTeX Warning: Reference `sec:R' on page 3 undefined on input line 299.
LaTeX Warning: Reference `sec:usecase' on page 3 undefined on input line 300.
LaTeX Warning: Reference `sec:benchmarks' on page 3 undefined on input line 301
.
LaTeX Warning: Reference `eq:olm' on page 3 undefined on input line 311.
LaTeX Warning: Reference `eq:all_subsets' on page 3 undefined on input line 315
.
Package natbib Warning: Citation `gatu:03' on page 3 undefined on input line 31
7.
Package natbib Warning: Citation `gatu:07' on page 3 undefined on input line 31
7.
Package natbib Warning: Citation `smith:89' on page 3 undefined on input line 3
17.
Package natbib Warning: Citation `golub:96' on page 3 undefined on input line 3
35.
Package natbib Warning: Citation `kontoghiorghes:00' on page 3 undefined on inp
ut line 335.
Package natbib Warning: Citation `smith:89' on page 3 undefined on input line 3
35.
Package natbib Warning: Citation `gatu:06' on page 3 undefined on input line 33
9.
Package natbib Warning: Citation `hofmann:07' on page 3 undefined on input line
339.
LaTeX Warning: Reference `fig:dca_tree' on page 3 undefined on input line 339.
Overfull \hbox (5.47499pt too wide) has occurred while \output is active
[] \T1/lmr/m/n/10.95 3
[3]
Package amsmath Warning: Foreign command \atop;
(amsmath) \frac or \genfrac should be used instead
(amsmath) on input line 364.
Package natbib Warning: Citation `gatu:06' on page 4 undefined on input line 38
7.
LaTeX Warning: Reference `eq:all_subsets' on page 4 undefined on input line 389
.
Package natbib Warning: Citation `hofmann:07' on page 4 undefined on input line
393.
LaTeX Warning: Reference `eq:all_subsets' on page 4 undefined on input line 394
.
Package natbib Warning: Citation `gatu:06' on page 4 undefined on input line 41
3.
Package natbib Warning: Citation `hofmann:07' on page 4 undefined on input line
418.
Overfull \hbox (5.47499pt too wide) has occurred while \output is active
\T1/lmr/m/n/10.95 4 []
[4]
Package natbib Warning: Citation `gatu:06' on page 5 undefined on input line 44
2.
Package natbib Warning: Citation `hofmann:07' on page 5 undefined on input line
442.
LaTeX Warning: Reference `eq:best_subset' on page 5 undefined on input line 450
.
LaTeX Warning: Reference `eq:f:monotonicity' on page 5 undefined on input line
453.
LaTeX Warning: Reference `eq:all_subsets' on page 5 undefined on input line 481
.
LaTeX Warning: Reference `eq:best_subset' on page 5 undefined on input line 482
.
LaTeX Warning: Reference `tab:structure' on page 5 undefined on input line 491.
Package natbib Warning: Citation `chambers:92' on page 5 undefined on input lin
e 525.
Overfull \hbox (5.47499pt too wide) has occurred while \output is active
[] \T1/lmr/m/n/10.95 5
[5]
Package natbib Warning: Citation `miller:02' on page 6 undefined on input line
538.
Overfull \hbox (5.47499pt too wide) has occurred while \output is active
\T1/lmr/m/n/10.95 6 []
[6]
LaTeX Warning: Reference `eq:aic' on page 7 undefined on input line 595.
Package natbib Warning: Citation `akaike:74' on page 7 undefined on input line
601.
Package natbib Warning: Citation `schwarz:78' on page 7 undefined on input line
603.
LaTeX Warning: Reference `tab:params' on page 7 undefined on input line 657.
Overfull \hbox (5.47499pt too wide) has occurred while \output is active
[] \T1/lmr/m/n/10.95 7
[7]
LaTeX Warning: Reference `sec:benchmarks' on page 8 undefined on input line 694
.
LaTeX Warning: Reference `eq:all_subsets:subrange' on page 8 undefined on input
line 699.
LaTeX Warning: Reference `eq:abba' on page 8 undefined on input line 708.
LaTeX Warning: Reference `sec:comput' on page 8 undefined on input line 729.
Overfull \hbox (5.47499pt too wide) has occurred while \output is active
\T1/lmr/m/n/10.95 8 []
[8]
LaTeX Warning: Reference `tab:components' on page 9 undefined on input line 746
.
LaTeX Warning: Reference `tab:methods' on page 9 undefined on input line 772.
Package natbib Warning: Citation `bauer:15' on page 9 undefined on input line 8
37.
Package natbib Warning: Citation `glahn:72' on page 9 undefined on input line 8
40.
Package natbib Warning: Citation `wilks:11' on page 9 undefined on input line 8
43.
Overfull \hbox (5.47499pt too wide) has occurred while \output is active
[] \T1/lmr/m/n/10.95 9
[9]
Package natbib Warning: Citation `hamill:13' on page 10 undefined on input line
853.
Overfull \hbox (10.94998pt too wide) has occurred while \output is active
\T1/lmr/m/n/10.95 10 []
[10]
LaTeX Warning: Reference `tab:summary' on page 11 undefined on input line 885.
LaTeX Warning: Reference `fig:image:mos1' on page 11 undefined on input line 94
7.
LaTeX Warning: Reference `fig:plot:mos1' on page 11 undefined on input line 947
.
LaTeX Warning: Reference `tab:summary' on page 11 undefined on input line 950.
LaTeX Warning: Reference `fig:image:mos2' on page 11 undefined on input line 99
6.
LaTeX Warning: Reference `fig:plot:mos2' on page 11 undefined on input line 997
.
LaTeX Warning: Reference `tab:summary' on page 11 undefined on input line 1001.
Overfull \hbox (10.94998pt too wide) has occurred while \output is active
[] \T1/lmr/m/n/10.95 11
[11]
LaTeX Warning: Reference `fig:image:mos2' on page 12 undefined on input line 10
13.
Underfull \vbox (badness 10000) has occurred while \output is active
Overfull \hbox (10.94998pt too wide) has occurred while \output is active
\T1/lmr/m/n/10.95 12 []
[12 <./lmSubsets-mos1-best-image.pdf> <./lmSubsets-mos2-all-image.pdf>]
Package natbib Warning: Citation `messner:16' on page 13 undefined on input lin
e 1029.
Package natbib Warning: Citation `messner:17' on page 13 undefined on input lin
e 1029.
Overfull \hbox (10.94998pt too wide) has occurred while \output is active
[] \T1/lmr/m/n/10.95 13
[13 <./lmSubsets-mos1-best-plot.pdf> <./lmSubsets-mos2-all-plot.pdf>]
Package natbib Warning: Citation `hofmann:07' on page 14 undefined on input lin
e 1080.
LaTeX Warning: Reference `tab:bm1' on page 14 undefined on input line 1081.
LaTeX Warning: Reference `tab:bm2' on page 14 undefined on input line 1087.
LaTeX Warning: Reference `sec:intro' on page 14 undefined on input line 1200.
LaTeX Warning: Reference `tab:bm3' on page 14 undefined on input line 1213.
LaTeX Warning: Reference `eq:bba+' on page 14 undefined on input line 1270.
LaTeX Warning: Reference `tab:bm4' on page 14 undefined on input line 1280.
LaTeX Warning: Reference `tab:bm5' on page 14 undefined on input line 1283.
Overfull \hbox (10.94998pt too wide) has occurred while \output is active
\T1/lmr/m/n/10.95 14 []
[14]
Package natbib Warning: Citation `tibshirani:96' on page 15 undefined on input
line 1338.
Overfull \hbox (10.94998pt too wide) has occurred while \output is active
[] \T1/lmr/m/n/10.95 15
[15]
LaTeX Warning: Reference `tab:bmlasso' on page 16 undefined on input line 1354.
Underfull \vbox (badness 2980) has occurred while \output is active
Overfull \hbox (10.94998pt too wide) has occurred while \output is active
\T1/lmr/m/n/10.95 16 []
[16]
Overfull \hbox (10.94998pt too wide) has occurred while \output is active
[] \T1/lmr/m/n/10.95 17
[17]
No file lmSubsets.bbl.
Package natbib Warning: There were undefined citations.
Overfull \hbox (10.94998pt too wide) has occurred while \output is active
\T1/lmr/m/n/10.95 18 []
[18] (./lmSubsets.aux)
LaTeX Warning: There were undefined references.
LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
Package rerunfilecheck Warning: File `lmSubsets.out' has changed.
(rerunfilecheck) Rerun to get outlines right
(rerunfilecheck) or use package `bookmark'.
)
(see the transcript file for additional information)
pdfTeX warning (dest): name{Hfootnote.1} has been referenced but does not exist
, replaced by a fixed one
</home/hornik/.texlive2026/texmf-var/fonts/pk/ljfour/public/bbm/bbm10.657pk></
usr/share/texmf/fonts/type1/public/lm/lmb10.pfb></usr/share/texmf/fonts/type1/p
ublic/lm/lmbo10.pfb></usr/share/texmf/fonts/type1/public/lm/lmbx10.pfb></usr/sh
are/texmf/fonts/type1/public/lm/lmbx12.pfb></usr/share/texmf/fonts/type1/public
/lm/lmmi10.pfb></usr/share/texmf/fonts/type1/public/lm/lmmi8.pfb></usr/share/te
xmf/fonts/type1/public/lm/lmr10.pfb></usr/share/texmf/fonts/type1/public/lm/lmr
6.pfb></usr/share/texmf/fonts/type1/public/lm/lmr8.pfb></usr/share/texmf/fonts/
type1/public/lm/lmr9.pfb></usr/share/texmf/fonts/type1/public/lm/lmri10.pfb></u
sr/share/texmf/fonts/type1/public/lm/lmri8.pfb></usr/share/texmf/fonts/type1/pu
blic/lm/lmro10.pfb></usr/share/texmf/fonts/type1/public/lm/lmss10.pfb></usr/sha
re/texmf/fonts/type1/public/lm/lmss8.pfb></usr/share/texmf/fonts/type1/public/l
m/lmssbx10.pfb></usr/share/texmf/fonts/type1/public/lm/lmsso10.pfb></usr/share/
texmf/fonts/type1/public/lm/lmsy10.pfb></usr/share/texmf/fonts/type1/public/lm/
lmsy6.pfb></usr/share/texmf/fonts/type1/public/lm/lmsy8.pfb></usr/share/texmf/f
onts/type1/public/lm/lmtt10.pfb></usr/share/texmf/fonts/type1/public/lm/lmtt8.p
fb></usr/share/texmf/fonts/type1/public/lm/lmtt9.pfb></usr/share/texmf/fonts/ty
pe1/public/lm/lmtto10.pfb>
Output written on lmSubsets.pdf (18 pages, 564343 bytes).
Transcript written on lmSubsets.log.
bibtex lmSubsets.aux
This is BibTeX, Version 0.99e (TeX Live 2026/Debian)
The top-level auxiliary file: lmSubsets.aux
The style file: jss.bst
Database file #1: lmSubsets.bib
pdflatex --shell-escape lmSubsets
This is pdfTeX, Version 3.141592653-2.6-1.40.29 (TeX Live 2026/Debian) (preloaded format=pdflatex)
\write18 enabled.
entering extended mode
(./lmSubsets.tex
LaTeX2e <2025-11-01>
L3 programming layer <2026-05-15>
(/home/hornik/tmp/R.check/r-release-gcc/Work/build/share/texmf/tex/latex/jss.cl
s
Document Class: jss 2023/03/05 3.4 jss class by Achim Zeileis
(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
Document Class: article 2025/01/22 v1.4n Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/size11.clo))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))
(/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty))
(/usr/share/texmf/tex/latex/lm/lmodern.sty)
(/usr/share/texlive/texmf-dist/tex/latex/natbib/natbib.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))))
(/usr/share/texlive/texmf-dist/tex/latex/auto-pst-pdf/auto-pst-pdf.sty
(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifpdf.sty)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex)))
(/usr/share/texlive/texmf-dist/tex/latex/ifplatform/ifplatform.sty
(/usr/share/texlive/texmf-dist/tex/latex/tools/shellesc.sty)
(/usr/share/texlive/texmf-dist/tex/generic/catchfile/catchfile.sty
(/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty))
(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifluatex.sty) (./lmSubsets.w18
))
-------------------------------------------------
auto-pst-pdf: Auxiliary LaTeX compilation
-------------------------------------------------
This is pdfTeX, Version 3.141592653-2.6-1.40.29 (TeX Live 2026/Debian) (preloaded format=latex)
entering extended mode
-------------------------------------------------
auto-pst-pdf: End auxiliary LaTeX compilation
-------------------------------------------------
Package auto-pst-pdf Warning:
Creation of lmSubsets-autopp.dvi failed.
This warning occured on input line 128.
Package auto-pst-pdf Warning:
Could not create lmSubsets-pics.pdf. Auxiliary files not deleted.
This warning occured on input line 128.
(/usr/share/texlive/texmf-dist/tex/latex/pst-pdf/pst-pdf.sty
(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifxetex.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty)
(/usr/share/texlive/texmf-dist/tex/generic/luatex85/luatex85.sty)
(/usr/share/texlive/texmf-dist/tex/latex/pstricks/pstricks.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/pst-xkey.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pstricks.tex
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-fp.tex
`pst-fp' v0.06, 2020/11/20 (hv))
(/usr/share/texlive/texmf-dist/tex/latex/pgf/utilities/pgffor.sty
(/usr/share/texlive/texmf-dist/tex/latex/pgf/utilities/pgfrcs.sty
(/usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgfutil-common.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgfutil-latex.def)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgfrcs.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/pgf.revision.tex)))
(/usr/share/texlive/texmf-dist/tex/latex/pgf/utilities/pgfkeys.sty
(/usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgfkeys.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgfkeyslibraryfiltered
.code.tex))) (/usr/share/texlive/texmf-dist/tex/latex/pgf/math/pgfmath.sty
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmath.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathutil.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathparser.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.basic.code
.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.trigonomet
ric.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.random.cod
e.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.comparison
.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.base.code.
tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.round.code
.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.misc.code.
tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.integerari
thmetics.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathcalc.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfloat.code.tex)))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgffor.code.tex))
`PSTricks' v3.22A <2025/12/13> (tvz,hv)
--- We are running latex or xelatex ---
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pstricks.con)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pstricks-color.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pstricks-arrows.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pstricks-dots.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-code-grid.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-code-box.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-code-arc.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-code-circle_ellipse.tex
) (/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-code-ref_rot.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-code-put.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-code-pspicture.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pstricks.con))
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-fp.tex
`pst-fp' v0.06, 2020/11/20 (hv)))
(/usr/share/texmf/tex/latex/preview/preview.sty)
(/usr/share/texlive/texmf-dist/tex/latex/environ/environ.sty
(/usr/share/texlive/texmf-dist/tex/latex/trimspaces/trimspaces.sty))))
(/usr/share/texlive/texmf-dist/tex/generic/thumbpdf/thumbpdf.sty)
(/usr/share/texlive/texmf-dist/tex/latex/mathtools/mathtools.sty
(/usr/share/texlive/texmf-dist/tex/latex/tools/calc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/mathtools/mhsetup.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/bbm-macros/bbm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/pgf/frontendlayer/tikz.sty
(/usr/share/texlive/texmf-dist/tex/latex/pgf/basiclayer/pgf.sty
(/usr/share/texlive/texmf-dist/tex/latex/pgf/basiclayer/pgfcore.sty
(/usr/share/texlive/texmf-dist/tex/latex/pgf/systemlayer/pgfsys.sty
(/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgf.cfg)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-pdftex.def
(/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-common-pdf.de
f)))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsyssoftpath.code.
tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsysprotocol.code.
tex))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcore.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfint.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepoints.code.te
x)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathconstruct.
code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathusage.code
.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorescopes.code.te
x)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoregraphicstate.c
ode.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoretransformation
s.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorequick.code.tex
)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreobjects.code.t
ex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathprocessing
.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorearrows.code.te
x)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreshade.code.tex
)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreimage.code.tex
)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreexternal.code.
tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorelayers.code.te
x)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoretransparency.c
ode.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepatterns.code.
tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorerdf.code.tex))
)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/modules/pgfmoduleshapes.code.tex
) (/usr/share/texlive/texmf-dist/tex/generic/pgf/modules/pgfmoduleplot.code.tex
)
(/usr/share/texlive/texmf-dist/tex/latex/pgf/compatibility/pgfcomp-version-0-65
.sty)
(/usr/share/texlive/texmf-dist/tex/latex/pgf/compatibility/pgfcomp-version-1-18
.sty))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/tikz.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/pgflibraryplothandlers
.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/modules/pgfmodulematrix.code.tex
)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibrarytopaths.code.tex)))
(/usr/share/texlive/texmf-dist/tex/latex/forest/forest.sty
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryshapes.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryshapes.geometric.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshape
s.geometric.code.tex))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryshapes.misc.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshape
s.misc.code.tex))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryshapes.symbols.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshape
s.symbols.code.tex))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryshapes.arrows.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshape
s.arrows.code.tex))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryshapes.callouts.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshape
s.callouts.code.tex))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryshapes.multipart.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshape
s.multipart.code.tex)))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryfit.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibrarycalc.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/pgflibraryintersection
s.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/pgflibraryfpu.code.tex
)) (/usr/share/texlive/texmf-dist/tex/latex/pgfopts/pgfopts.sty)
(/usr/share/texlive/texmf-dist/tex/latex/elocalloc/elocalloc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty
(/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)))
(/usr/share/texlive/texmf-dist/tex/latex/inlinedef/inlinedef.sty))
(/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)
(/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty)
(/usr/share/texlive/texmf-dist/tex/latex/caption/subcaption.sty
(/usr/share/texlive/texmf-dist/tex/latex/caption/caption.sty
(/usr/share/texlive/texmf-dist/tex/latex/caption/caption3.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/threeparttable/threeparttable.sty)
(/home/hornik/tmp/R.check/r-release-gcc/Work/build/share/texmf/tex/latex/Sweave
.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texmf/tex/latex/lm/t1lmr.fd))
Environment Schunk is already defined, stay with former definition)
(./lmSubsets.aux)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (./lmSubsets.out) (./lmSubsets.out) (/usr/share/texmf/tex/latex/lm/t1lmss.fd)
(/usr/share/texmf/tex/latex/lm/ot1lmr.fd)
(/usr/share/texmf/tex/latex/lm/omllmm.fd)
(/usr/share/texmf/tex/latex/lm/omslmsy.fd)
(/usr/share/texmf/tex/latex/lm/omxlmex.fd)
Package natbib Warning: Citation `hofmann:20' on page 1 undefined on input line
122.
(/usr/share/texmf/tex/latex/lm/t1lmtt.fd)
Preview: Fontsize 10.95pt
Preview: PDFoutput 1
Package natbib Warning: Citation `clarke:81' on page 1 undefined on input line
135.
Package natbib Warning: Citation `hastie:01' on page 1 undefined on input line
135.
Package natbib Warning: Citation `miller:02' on page 1 undefined on input line
139.
(/usr/share/texlive/texmf-dist/tex/latex/bbm-macros/ubbm.fd)
Package natbib Warning: Citation `golub:96' on page 1 undefined on input line 1
67.
[1
Non-PDF special ignored!
<special> ps: /pssetRGBcolor /setrgbcolor load def /pssetCMYKcolor /setcmyk...
Non-PDF special ignored!
<special> ps:tx@Dict begin gsave STV CP T /ps@rot 0 def grestore end
Non-PDF special ignored!
<special> ps:tx@Dict begin gsave STV CP T /ps@refangle 0. def grestore e...
{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texmf/fonts/enc/
dvips/lm/lm-ec.enc}{/usr/share/texmf/fonts/enc/dvips/lm/lm-mathsy.enc}{/usr/sha
re/texmf/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texmf/fonts/enc/dvips/lm/
lm-rm.enc}]
Package natbib Warning: Citation `miller:02' on page 2 undefined on input line
205.
Package natbib Warning: Citation `goldberg:89' on page 2 undefined on input lin
e 258.
Package natbib Warning: Citation `otten:89' on page 2 undefined on input line 2
58.
Package natbib Warning: Citation `leaps' on page 2 undefined on input line 263.
Package natbib Warning: Citation `miller:02' on page 2 undefined on input line
265.
Package natbib Warning: Citation `bestglm' on page 2 undefined on input line 26
6.
Package natbib Warning: Citation `BeSS' on page 2 undefined on input line 269.
Package natbib Warning: Citation `subselect' on page 2 undefined on input line
269.
Package natbib Warning: Citation `glmulti' on page 2 undefined on input line 27
2.
Package natbib Warning: Citation `wolters:15' on page 2 undefined on input line
275.
Package natbib Warning: Citation `friedman:10' on page 2 undefined on input lin
e 279.
Overfull \hbox (5.47499pt too wide) has occurred while \output is active
\T1/lmr/m/n/10.95 2 []
[2]
Package natbib Warning: Citation `lmSubsets' on page 3 undefined on input line
281.
Package natbib Warning: Citation `gatu:06' on page 3 undefined on input line 28
5.
Package natbib Warning: Citation `hofmann:07' on page 3 undefined on input line
285.
Package natbib Warning: Citation `hofmann:10' on page 3 undefined on input line
288.
Package natbib Warning: Citation `R' on page 3 undefined on input line 294.
Package natbib Warning: Citation `gatu:03' on page 3 undefined on input line 31
7.
Package natbib Warning: Citation `gatu:07' on page 3 undefined on input line 31
7.
Package natbib Warning: Citation `smith:89' on page 3 undefined on input line 3
17.
Package natbib Warning: Citation `golub:96' on page 3 undefined on input line 3
35.
Package natbib Warning: Citation `kontoghiorghes:00' on page 3 undefined on inp
ut line 335.
Package natbib Warning: Citation `smith:89' on page 3 undefined on input line 3
35.
Package natbib Warning: Citation `gatu:06' on page 3 undefined on input line 33
9.
Package natbib Warning: Citation `hofmann:07' on page 3 undefined on input line
339.
Overfull \hbox (5.47499pt too wide) has occurred while \output is active
[] \T1/lmr/m/n/10.95 3
[3]
Package amsmath Warning: Foreign command \atop;
(amsmath) \frac or \genfrac should be used instead
(amsmath) on input line 364.
Package natbib Warning: Citation `gatu:06' on page 4 undefined on input line 38
7.
Package natbib Warning: Citation `hofmann:07' on page 4 undefined on input line
393.
Package natbib Warning: Citation `gatu:06' on page 4 undefined on input line 41
3.
Package natbib Warning: Citation `hofmann:07' on page 4 undefined on input line
418.
Overfull \hbox (5.47499pt too wide) has occurred while \output is active
\T1/lmr/m/n/10.95 4 []
[4]
Package natbib Warning: Citation `gatu:06' on page 5 undefined on input line 44
2.
Package natbib Warning: Citation `hofmann:07' on page 5 undefined on input line
442.
Package natbib Warning: Citation `chambers:92' on page 5 undefined on input lin
e 525.
Overfull \hbox (5.47499pt too wide) has occurred while \output is active
[] \T1/lmr/m/n/10.95 5
[5]
Package natbib Warning: Citation `miller:02' on page 6 undefined on input line
538.
Overfull \hbox (5.47499pt too wide) has occurred while \output is active
\T1/lmr/m/n/10.95 6 []
[6]
Package natbib Warning: Citation `akaike:74' on page 7 undefined on input line
601.
Package natbib Warning: Citation `schwarz:78' on page 7 undefined on input line
603.
Overfull \hbox (5.47499pt too wide) has occurred while \output is active
[] \T1/lmr/m/n/10.95 7
[7]
Overfull \hbox (5.47499pt too wide) has occurred while \output is active
\T1/lmr/m/n/10.95 8 []
[8]
Package natbib Warning: Citation `bauer:15' on page 9 undefined on input line 8
37.
Package natbib Warning: Citation `glahn:72' on page 9 undefined on input line 8
40.
Package natbib Warning: Citation `wilks:11' on page 9 undefined on input line 8
43.
Overfull \hbox (5.47499pt too wide) has occurred while \output is active
[] \T1/lmr/m/n/10.95 9
[9]
Package natbib Warning: Citation `hamill:13' on page 10 undefined on input line
853.
Overfull \hbox (10.94998pt too wide) has occurred while \output is active
\T1/lmr/m/n/10.95 10 []
[10]
Overfull \hbox (10.94998pt too wide) has occurred while \output is active
[] \T1/lmr/m/n/10.95 11
[11]
Underfull \vbox (badness 10000) has occurred while \output is active
Overfull \hbox (10.94998pt too wide) has occurred while \output is active
\T1/lmr/m/n/10.95 12 []
[12 <./lmSubsets-mos1-best-image.pdf> <./lmSubsets-mos2-all-image.pdf>]
Package natbib Warning: Citation `messner:16' on page 13 undefined on input lin
e 1029.
Package natbib Warning: Citation `messner:17' on page 13 undefined on input lin
e 1029.
Overfull \hbox (10.94998pt too wide) has occurred while \output is active
[] \T1/lmr/m/n/10.95 13
[13 <./lmSubsets-mos1-best-plot.pdf> <./lmSubsets-mos2-all-plot.pdf>]
Package natbib Warning: Citation `hofmann:07' on page 14 undefined on input lin
e 1080.
Overfull \hbox (10.94998pt too wide) has occurred while \output is active
\T1/lmr/m/n/10.95 14 []
[14]
Package natbib Warning: Citation `tibshirani:96' on page 15 undefined on input
line 1338.
Overfull \hbox (10.94998pt too wide) has occurred while \output is active
[] \T1/lmr/m/n/10.95 15
[15]
Underfull \vbox (badness 2980) has occurred while \output is active
Overfull \hbox (10.94998pt too wide) has occurred while \output is active
\T1/lmr/m/n/10.95 16 []
[16]
Overfull \hbox (10.94998pt too wide) has occurred while \output is active
[] \T1/lmr/m/n/10.95 17
[17] (./lmSubsets.bbl
LaTeX Font Warning: Font shape `T1/lmr/b/it' in size <10.95> not available
(Font) Font shape `T1/lmr/b/sl' tried instead on input line 28.
Overfull \hbox (10.94998pt too wide) has occurred while \output is active
\T1/lmr/m/n/10.95 18 []
[18]
Overfull \hbox (10.94998pt too wide) has occurred while \output is active
[] \T1/lmr/m/n/10.95 19
[19])
Package natbib Warning: There were undefined citations.
Overfull \hbox (10.94998pt too wide) has occurred while \output is active
\T1/lmr/m/n/10.95 20 []
[20]
Overfull \hbox (10.94998pt too wide) has occurred while \output is active
[] \T1/lmr/m/n/10.95 21
[21] (./lmSubsets.aux
Package natbib Warning: Citation(s) may have changed.
(natbib) Rerun to get citations correct.
) )
(see the transcript file for additional information)
pdfTeX warning (dest): name{Hfootnote.1} has been referenced but does not exist
, replaced by a fixed one
</home/hornik/.texlive2026/texmf-var/fonts/pk/ljfour/public/bbm/bbm10.657pk></
usr/share/texmf/fonts/type1/public/lm/lmb10.pfb></usr/share/texmf/fonts/type1/p
ublic/lm/lmbo10.pfb></usr/share/texmf/fonts/type1/public/lm/lmbx10.pfb></usr/sh
are/texmf/fonts/type1/public/lm/lmbx12.pfb></usr/share/texmf/fonts/type1/public
/lm/lmmi10.pfb></usr/share/texmf/fonts/type1/public/lm/lmmi8.pfb></usr/share/te
xmf/fonts/type1/public/lm/lmr10.pfb></usr/share/texmf/fonts/type1/public/lm/lmr
6.pfb></usr/share/texmf/fonts/type1/public/lm/lmr8.pfb></usr/share/texmf/fonts/
type1/public/lm/lmr9.pfb></usr/share/texmf/fonts/type1/public/lm/lmri10.pfb></u
sr/share/texmf/fonts/type1/public/lm/lmri8.pfb></usr/share/texmf/fonts/type1/pu
blic/lm/lmro10.pfb></usr/share/texmf/fonts/type1/public/lm/lmss10.pfb></usr/sha
re/texmf/fonts/type1/public/lm/lmss8.pfb></usr/share/texmf/fonts/type1/public/l
m/lmssbx10.pfb></usr/share/texmf/fonts/type1/public/lm/lmsso10.pfb></usr/share/
texmf/fonts/type1/public/lm/lmsy10.pfb></usr/share/texmf/fonts/type1/public/lm/
lmsy6.pfb></usr/share/texmf/fonts/type1/public/lm/lmsy8.pfb></usr/share/texmf/f
onts/type1/public/lm/lmtt10.pfb></usr/share/texmf/fonts/type1/public/lm/lmtt8.p
fb></usr/share/texmf/fonts/type1/public/lm/lmtt9.pfb></usr/share/texmf/fonts/ty
pe1/public/lm/lmtto10.pfb>
Output written on lmSubsets.pdf (21 pages, 587571 bytes).
Transcript written on lmSubsets.log.
pdflatex --shell-escape lmSubsets
This is pdfTeX, Version 3.141592653-2.6-1.40.29 (TeX Live 2026/Debian) (preloaded format=pdflatex)
\write18 enabled.
entering extended mode
(./lmSubsets.tex
LaTeX2e <2025-11-01>
L3 programming layer <2026-05-15>
(/home/hornik/tmp/R.check/r-release-gcc/Work/build/share/texmf/tex/latex/jss.cl
s
Document Class: jss 2023/03/05 3.4 jss class by Achim Zeileis
(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
Document Class: article 2025/01/22 v1.4n Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/size11.clo))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))
(/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty))
(/usr/share/texmf/tex/latex/lm/lmodern.sty)
(/usr/share/texlive/texmf-dist/tex/latex/natbib/natbib.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))))
(/usr/share/texlive/texmf-dist/tex/latex/auto-pst-pdf/auto-pst-pdf.sty
(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifpdf.sty)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex)))
(/usr/share/texlive/texmf-dist/tex/latex/ifplatform/ifplatform.sty
(/usr/share/texlive/texmf-dist/tex/latex/tools/shellesc.sty)
(/usr/share/texlive/texmf-dist/tex/generic/catchfile/catchfile.sty
(/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty))
(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifluatex.sty) (./lmSubsets.w18
))
-------------------------------------------------
auto-pst-pdf: Auxiliary LaTeX compilation
-------------------------------------------------
This is pdfTeX, Version 3.141592653-2.6-1.40.29 (TeX Live 2026/Debian) (preloaded format=latex)
entering extended mode
-------------------------------------------------
auto-pst-pdf: End auxiliary LaTeX compilation
-------------------------------------------------
Package auto-pst-pdf Warning:
Creation of lmSubsets-autopp.dvi failed.
This warning occured on input line 128.
Package auto-pst-pdf Warning:
Could not create lmSubsets-pics.pdf. Auxiliary files not deleted.
This warning occured on input line 128.
(/usr/share/texlive/texmf-dist/tex/latex/pst-pdf/pst-pdf.sty
(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifxetex.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty)
(/usr/share/texlive/texmf-dist/tex/generic/luatex85/luatex85.sty)
(/usr/share/texlive/texmf-dist/tex/latex/pstricks/pstricks.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/pst-xkey.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pstricks.tex
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-fp.tex
`pst-fp' v0.06, 2020/11/20 (hv))
(/usr/share/texlive/texmf-dist/tex/latex/pgf/utilities/pgffor.sty
(/usr/share/texlive/texmf-dist/tex/latex/pgf/utilities/pgfrcs.sty
(/usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgfutil-common.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgfutil-latex.def)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgfrcs.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/pgf.revision.tex)))
(/usr/share/texlive/texmf-dist/tex/latex/pgf/utilities/pgfkeys.sty
(/usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgfkeys.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgfkeyslibraryfiltered
.code.tex))) (/usr/share/texlive/texmf-dist/tex/latex/pgf/math/pgfmath.sty
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmath.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathutil.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathparser.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.basic.code
.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.trigonomet
ric.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.random.cod
e.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.comparison
.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.base.code.
tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.round.code
.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.misc.code.
tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfunctions.integerari
thmetics.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathcalc.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfmathfloat.code.tex)))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgffor.code.tex))
`PSTricks' v3.22A <2025/12/13> (tvz,hv)
--- We are running latex or xelatex ---
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pstricks.con)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pstricks-color.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pstricks-arrows.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pstricks-dots.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-code-grid.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-code-box.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-code-arc.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-code-circle_ellipse.tex
) (/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-code-ref_rot.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-code-put.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-code-pspicture.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pstricks.con))
(/usr/share/texlive/texmf-dist/tex/generic/pstricks/pst-fp.tex
`pst-fp' v0.06, 2020/11/20 (hv)))
(/usr/share/texmf/tex/latex/preview/preview.sty)
(/usr/share/texlive/texmf-dist/tex/latex/environ/environ.sty
(/usr/share/texlive/texmf-dist/tex/latex/trimspaces/trimspaces.sty))))
(/usr/share/texlive/texmf-dist/tex/generic/thumbpdf/thumbpdf.sty)
(/usr/share/texlive/texmf-dist/tex/latex/mathtools/mathtools.sty
(/usr/share/texlive/texmf-dist/tex/latex/tools/calc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/mathtools/mhsetup.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/bbm-macros/bbm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/pgf/frontendlayer/tikz.sty
(/usr/share/texlive/texmf-dist/tex/latex/pgf/basiclayer/pgf.sty
(/usr/share/texlive/texmf-dist/tex/latex/pgf/basiclayer/pgfcore.sty
(/usr/share/texlive/texmf-dist/tex/latex/pgf/systemlayer/pgfsys.sty
(/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgf.cfg)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-pdftex.def
(/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-common-pdf.de
f)))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsyssoftpath.code.
tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsysprotocol.code.
tex))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcore.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/math/pgfint.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepoints.code.te
x)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathconstruct.
code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathusage.code
.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorescopes.code.te
x)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoregraphicstate.c
ode.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoretransformation
s.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorequick.code.tex
)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreobjects.code.t
ex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepathprocessing
.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorearrows.code.te
x)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreshade.code.tex
)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreimage.code.tex
)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoreexternal.code.
tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorelayers.code.te
x)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcoretransparency.c
ode.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorepatterns.code.
tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/basiclayer/pgfcorerdf.code.tex))
)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/modules/pgfmoduleshapes.code.tex
) (/usr/share/texlive/texmf-dist/tex/generic/pgf/modules/pgfmoduleplot.code.tex
)
(/usr/share/texlive/texmf-dist/tex/latex/pgf/compatibility/pgfcomp-version-0-65
.sty)
(/usr/share/texlive/texmf-dist/tex/latex/pgf/compatibility/pgfcomp-version-1-18
.sty))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/tikz.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/pgflibraryplothandlers
.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/modules/pgfmodulematrix.code.tex
)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibrarytopaths.code.tex)))
(/usr/share/texlive/texmf-dist/tex/latex/forest/forest.sty
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryshapes.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryshapes.geometric.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshape
s.geometric.code.tex))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryshapes.misc.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshape
s.misc.code.tex))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryshapes.symbols.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshape
s.symbols.code.tex))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryshapes.arrows.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshape
s.arrows.code.tex))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryshapes.callouts.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshape
s.callouts.code.tex))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryshapes.multipart.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/shapes/pgflibraryshape
s.multipart.code.tex)))
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibraryfit.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tik
zlibrarycalc.code.tex)
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/pgflibraryintersection
s.code.tex
(/usr/share/texlive/texmf-dist/tex/generic/pgf/libraries/pgflibraryfpu.code.tex
)) (/usr/share/texlive/texmf-dist/tex/latex/pgfopts/pgfopts.sty)
(/usr/share/texlive/texmf-dist/tex/latex/elocalloc/elocalloc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty
(/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)))
(/usr/share/texlive/texmf-dist/tex/latex/inlinedef/inlinedef.sty))
(/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)
(/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty)
(/usr/share/texlive/texmf-dist/tex/latex/caption/subcaption.sty
(/usr/share/texlive/texmf-dist/tex/latex/caption/caption.sty
(/usr/share/texlive/texmf-dist/tex/latex/caption/caption3.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/threeparttable/threeparttable.sty)
(/home/hornik/tmp/R.check/r-release-gcc/Work/build/share/texmf/tex/latex/Sweave
.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texmf/tex/latex/lm/t1lmr.fd))
Environment Schunk is already defined, stay with former definition)
(./lmSubsets.aux)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (./lmSubsets.out) (./lmSubsets.out) (/usr/share/texmf/tex/latex/lm/t1lmss.fd)
(/usr/share/texmf/tex/latex/lm/ot1lmr.fd)
(/usr/share/texmf/tex/latex/lm/omllmm.fd)
(/usr/share/texmf/tex/latex/lm/omslmsy.fd)
(/usr/share/texmf/tex/latex/lm/omxlmex.fd)
! Undefined control sequence.
<argument> cite.\@citeb
\@extra@b@citeb
l.122 \begin{document}
?
! Emergency stop.
<argument> cite.\@citeb
\@extra@b@citeb
l.122 \begin{document}
! ==> Fatal error occurred, no output PDF file produced!
Transcript written on lmSubsets.log.
make[1]: *** [Makefile:5: all] Error 1
make[1]: Leaving directory '/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/lmSubsets.Rcheck/vign_test/lmSubsets/vignettes'
Error in tools::buildVignettes(dir = "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/lmSubsets.Rcheck/vign_test/lmSubsets", :
running 'make' failed
Execution halted
Flavor: r-release-linux-x86_64
Need mirroring services?
Contact our team at info@vpspulse.com.
Mirror powered by VPSpulse
Infrastructure sponsored by VPSPulse & Secure Payments by ArionPay.