# An Efficient and Deterministic Method for Identifying Topological Domains in Genomes

## Documentation for package ‘TopDom’ version 0.10.1

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

countsPerRegion | Calculates Counts per Region in a TopDomData Object
ggCountHeatmap | Produce a Count Heatmap
ggDomain | Add a Topological Domain to a Count Heatmap
ggDomainLabel | Add a Topological Domain Label to a Count Heatmap
legacy | Easy Access to the Original TopDom 0.0.1 and 0.0.2 Implementations
overlapScores | Calculates Overlap Scores Between Two Sets of Topological Domains
readHiC | Reads Hi-C Contact Data from File
subsetByRegion | Subset a TopDomData Object by Region
TopDom | Identify Topological Domains from a Hi-C Contact Matrix
TopDom-data | Data for the TopDom Package