arg_set-class           Create and modify argument sets, then make an
                        argument grid for batch simulation
as.mcmc.list.list       Convert a list of simulation output to a
                        mcmc.list object
attach_all_matrices     Attach all matrices in a batch simulation
autolayer.barrier       Get a ggplot2 layer from a barrier object
batch_simulation        Perform a batch simulation.
calculate_barrier       Functions for calculating energy barrier from
                        landscapes
check_conv              Graphical diagnoses to check if the simulation
                        converges
get_dist                Get the probability distribution from a
                        landscape object
hash_big_matrix-class   Class "hash_big_matrix": big matrix with a md5
                        hash reference
make_2d_matrix          Make a matrix of 2D static landscape plots for
                        one or two parameters
make_2d_static          Make 2D static landscape plot for a single
                        simulation output
make_3d_animation       Make 3d animations from multiple simulations
make_3d_matrix          Make a matrix of 3D static landscape plots for
                        one or two parameters
make_3d_static          Make 3D static landscape plots from simulation
                        output
make_4d_static          Make 4D static space-color plots from
                        simulation output
make_barrier_grid_2d    Make a grid for calculating barriers for 2d
                        landscapes
make_barrier_grid_3d    Make a grid for calculating barriers for 3d
                        landscapes
multi_init_simulation   Simulate multiple 1-3D Markovian Stochastic
                        Differential Equations
plot.landscape          Make plots from landscape objects
save_landscape          Save landscape plots
sim_SDE                 Simulate 1-3D Markovian Stochastic Differential
                        Equations
sim_fun_grad            A simple gradient simulation function for
                        testing
sim_fun_nongrad         A simple non-gradient simulation function for
                        testing
sim_fun_test            A simple simulation function for testing
summary.barrier         Summarize the barrier height from a 'barrier'
                        object
