Package: mmcmcBayes
Type: Package
Title: Multistage MCMC Method for Detecting DMRs
Version: 0.2.0
Authors@R: 
    c(
    person("Zhexuan", "Yang", 
           email = "zky5198@psu.edu", 
           role = c("aut", "cre")),
    person("Duchwan", "Ryu", 
           email = "dryu@niu.edu", 
           role = "aut"),
    person("Feng", "Luan", 
           email = "fluan1@niu.edu", 
           role = "aut")
    )
Description: Implements differential methylation region (DMR) detection using a
    multistage Markov chain Monte Carlo (MCMC) algorithm based on the
    alpha-skew generalized normal (ASGN) distribution. Version 0.2.0 removes
    the Anderson-Darling test stage, improves computational efficiency of the
    core ASGN and multistage MCMC routines, and adds convenience functions for
    summarizing and visualizing detected DMRs. The methodology is based on
    Yang (2025) <https://www.proquest.com/docview/3218878972>.
License: GPL-3
URL: https://github.com/zyang1919/mmcmcBayes
BugReports: https://github.com/zyang1919/mmcmcBayes/issues
Depends: R (>= 4.0.0)
Imports: stats, graphics, MCMCpack (>= 1.4-0)
Suggests: kSamples, testthat (>= 3.0.0), knitr, rmarkdown
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.3.3
NeedsCompilation: no
Packaged: 2025-12-20 18:12:51 UTC; zhexuanyang
Author: Zhexuan Yang [aut, cre],
  Duchwan Ryu [aut],
  Feng Luan [aut]
Maintainer: Zhexuan Yang <zky5198@psu.edu>
Repository: CRAN
Date/Publication: 2025-12-20 23:50:02 UTC
Built: R 4.5.3; ; 2026-06-11 19:53:12 UTC; windows
