# Analysis of Evolutionary Rates in an OU Framework

## Documentation for package ‘OUwie’ version 3.0.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

check.identify | A test of regime identifiability
fix.kappa | Adjust tree for matrix condition
OUwie | Generalized Hansen models
OUwie.anc | Estimate ancestral states given a fitted OUwie model
OUwie.boot | Parametric bootstrap function
OUwie.contour | Generates data for contour plot of likelihood surface
OUwie.dredge | Generalized Detection of shifts in OU process
OUwie.fixed | Generalized Hansen model likelihood calculator
OUwie.format | Format data and tree for OUwie
OUwie.sim | Generalized Hansen model simulator
plot.OUwie.contour | Contour plot
trait | An example dataset
tree | An example dataset