Package: CNVScope
Type: Package
Title: A Versatile Toolkit for Copy Number Variation Relationship Data
        Analysis and Visualization
Version: 3.7.6
Date: 2026-07-04
Authors@R: c(person(given = "James", family = "Dalgleish",
                    role = c("aut", "cre"), email = "jamesdalg@gmail.com",
                    comment = c("Alternate contact: james.dalgleish@keble.ox.ac.uk")),
             person(given = "Yonghong", family = "Wang", role = "aut"),
             person(given = "Jack", family = "Zhu", role = "aut"),
             person(given = "Paul", family = "Meltzer", role = c("aut","sad") ))
BugReports: https://github.com/jamesdalg/CNVScope/issues/
Depends: R (>= 4.1.0),ggplot2
Imports: tidyr,reshape2,magrittr, jointseg,shiny,RCurl,foreach,
        Matrix,OpenImageR,matrixStats, plyr,data.table,dplyr,
        doParallel,stringr,rtracklayer
Suggests: knitr, remotes,pwr,ComplexHeatmap,rmarkdown,
        igraph,visNetwork,circlize,plotly, biomaRt,GenomicInteractions,
        InteractionSet,GenomicRanges,GenomicFeatures,IRanges,rslurm,
        shinythemes,shinycssloaders,DT,logging,heatmaply,
        S4Vectors,BiocManager,shinyjs,htmltools,htmlwidgets,
        GenomeInfoDb,BSgenome.Hsapiens.UCSC.hg19,tibble,smoothie
VignetteBuilder: knitr
URL: https://github.com/jamesdalg/CNVScope/
biocViews:
Description: Provides the ability to create interaction maps, discover CNV map domains (edges), gene annotate interactions, and create interactive visualizations of these CNV interaction maps.
License: BSD_3_clause + file LICENSE
Encoding: UTF-8
LazyData: true
Config/roxygen2/version: 8.0.0
NeedsCompilation: no
Packaged: 2026-07-04 07:53:44 UTC; jd
Author: James Dalgleish [aut, cre] (Alternate contact:
    james.dalgleish@keble.ox.ac.uk),
  Yonghong Wang [aut],
  Jack Zhu [aut],
  Paul Meltzer [aut, sad]
Maintainer: James Dalgleish <jamesdalg@gmail.com>
Repository: CRAN
Date/Publication: 2026-07-04 10:10:26 UTC
Built: R 4.5.3; ; 2026-07-21 00:28:53 UTC; windows
