# Multi-Reader, Multi-Case Analysis Methods (ROC, Agreement, and Other Metrics)

## Documentation for package ‘iMRMC’ version 2.1.0

- DESCRIPTION file
- Package NEWS

## Help Pages

convertDFtoDesignMatrix | Convert an MRMC data frame to a design matrix
convertDFtoScoreMatrix | Convert an MRMC data frame to a score matrix
createGroups | Assign a group label to items in a vector
createIMRMCdf | Convert a data frame with all needed factors to doIMRMC formatted data frame
deleteCol | Delete a data frame column
dfMRMC_example | Example of iMRMC formatted data frame
doAUCmrmc | MRMC analysis for arbitrary design dataset
doIMRMC | MRMC analysis for arbitrary design dataset
doIMRMC_java | MRMC analysis of the area under the ROC curve
doROCavg | Empirically average over multiple empirical ROC curves
doROCcurveMRMC | Create a standard set of ROC curves from an MRMC data frame
doROCxy | Create empirical ROC curve
doROCxyMRMC | Create empirical ROC curve from an MRMC formatted data frame
extractPairedComparisonsBRBM | Extract between-reader between-modality pairs of scores
extractPairedComparisonsWRBM | Extract within-reader between-modality pairs of scores
getBRBM | Get between-reader, between-modality paired data from an MRMC data frame
getMRMCdataset | Import MRMC dataset from the web (https://github.com/DIDSR/iMRMC/wiki/iMRMC-Datasets)
getMRMCscore | Get a score from an MRMC data frame
getWRBM | Get within-reader, between-modality paired data from an MRMC data frame
init.lecuyerRNG | Initialize the l'Ecuyer random number generator
laBRBM | MRMC Analysis of Limits of Agreement using ANOVA
laBRWM | MRMC Analysis of Limits of Agreement using ANOVA
laWRBM | MRMC Analysis of Limits of Agreement using ANOVA
laWRWM | MRMC Analysis of Limits of Agreement using ANOVA
limitsOfAgreement | MRMC Analysis of Limits of Agreement using ANOVA
renameCol | Rename a data frame column name or a list object name
roc2binary | Convert ROC data formatted for doIMRMC to TPF and FPF data formatted for doIMRMC
roeMetzConfigs | roeMetzConfigs
sim.gRoeMetz | Simulate an MRMC data set of an ROC experiment comparing two modalities
sim.gRoeMetz.config | Create a configuration object for the sim.gRoeMetz program
sim.NormalIG.Hierarchical | Simulate an MRMC data set comparing two modalities by a hierarchical model
sim.NormalIG.Hierarchical.config | Create a configuration object for the sim.NormalIG.Hierarchical function
simMRMC | Simulate an MRMC data set
simRoeMetz.example | Simulates a sample MRMC ROC experiment
successDFtoROCdf | Convert an MRMC data frame of successes to one formatted for doIMRMC
undoIMRMCdf | Convert a doIMRMC formatted data frame to a standard data frame with all factors.
uStat11 | Analysis of U-statistics degree 1,1
uStat11.conditionalD | Analysis of U-statistics degree 1,1
uStat11.diff | Create the kernel and design matrices for uStat11
uStat11.identity | Create the kernel and design matrices for uStat11
uStat11.jointD | Analysis of U-statistics degree 1,1