Package: HaDeX2
Title: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass
        Spectrometry Data
Version: 1.0.0
Authors@R: c(person("Weronika", "Puchala", 
           email = "puchala.weronika@gmail.com", 
           comment = c(ORCID = "0000-0003-2163-1429"),
           role = c("cre", "aut")),
           person("Michal", "Burdukiewicz", 
           email = "michalburdukiewicz@gmail.com", 
           comment = c(ORCID = "0000-0001-8926-582X"),
           role = c("aut")),
           person("Dominik", "Rafacz", 
           email = "dominikrafacz@gmail.com",
           role = c("ctb")),
           person("Krystyna", "Grzesiak", 
           email = "krygrz11@gmail.com",
           role = c("ctb")))
Description: Processing, analysis and visualization of Hydrogen Deuterium eXchange monitored by 
             Mass Spectrometry experiments (HDX-MS). 'HaDeX2' introduces a new 
             standardized and reproducible workflow for the analysis of the HDX-MS data, including uncertainty propagation, data aggregation and visualization on 3D structure.
             Additionally, it covers data exploration, quality control and generation of publication-quality 
             figures. All functionalities are also available in the accompanying 'shiny' app.
Depends: R (>= 3.5)
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
Imports: checkmate, data.table, dplyr, ggplot2, glue, gridExtra,
        magick, purrr, readr, readxl, r3dmol (>= 0.1.2), remotes,
        stringi, tidyr, ggiraph
Suggests: bookdown, digest, knitr, magrittr, pander, renv, rmarkdown,
        microbenchmark, testthat, vdiffr, scales, shiny, spelling
VignetteBuilder: knitr
Language: en-US
URL: https://hadexversum.github.io/HaDeX2/
NeedsCompilation: no
Packaged: 2026-02-05 15:05:03 UTC; User
Author: Weronika Puchala [cre, aut] (ORCID:
    <https://orcid.org/0000-0003-2163-1429>),
  Michal Burdukiewicz [aut] (ORCID:
    <https://orcid.org/0000-0001-8926-582X>),
  Dominik Rafacz [ctb],
  Krystyna Grzesiak [ctb]
Maintainer: Weronika Puchala <puchala.weronika@gmail.com>
Repository: CRAN
Date/Publication: 2026-02-09 13:30:26 UTC
Built: R 4.6.0; ; 2026-04-25 13:04:00 UTC; unix
