# Simulate and Model Family Pedigrees with Structured Founders

## Documentation for package ‘simfam’ version 1.1.6

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

admix_fam | Calculate admixture matrix of a pedigree with known admixture of founders
admix_last_gen | Calculate admixture matrix for last generation of a pedigree with admixture of founders
draw_sex | Draw sex values randomly for a list of individuals
fam_ancestors | Construct an ancestors-only pedigree for one person 'G'-generations deep
geno_fam | Draw random genotypes on a pedigree with known founder genotypes
geno_last_gen | Draw random genotypes for last generation of a pedigree with known founder genotypes
kinship_fam | Calculate kinship matrix of a pedigree with structured founders
kinship_last_gen | Calculate kinship matrix for last generation of a pedigree with structured founders
prune_fam | Remove non-ancestors of a set of individuals from pedigree
recomb_admix_inds | Reduce haplotype ancestry data to population ancestry dosage matrices
recomb_fam | Draw recombination breaks for autosomes from a pedigree
recomb_geno_inds | Reduce haplotype data to genotype matrix
recomb_haplo_inds | Construct haplotypes of individuals given their ancestral blocks and the ancestral haplotype variants
recomb_init_founders | Initialize chromosome structures for founders
recomb_last_gen | Draw recombination breaks for autosomes for last generation of a pedigree
recomb_map_fix_ends_chr | Extrapolate and shift recombination map of one chromosome to ends
recomb_map_hg | Simplified recombination maps for human genomes
recomb_map_hg37 | Simplified recombination maps for human genomes
recomb_map_hg38 | Simplified recombination maps for human genomes
recomb_map_inds | Map recombination breaks from genetic positions to base pair coordinates
recomb_map_simplify_chr | Simplify recombination map of one chromosome to a desired numerical precision
sim_pedigree | Construct a random pedigree