# Calibration and Summarisation of Radiocarbon Dates

## Documentation for package ‘carbondate’ version 1.1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

alces | Example real-life data - Alces in Yukon and Alaska
armit | Example real-life data - Population Decline in Iron Age Ireland
bison | Example real-life data - Bison in Yukon and Alaska
buchanan | Example real-life data - Palaeo-Indian demography
CalibrateSingleDetermination | Calibrate a Single Radiocarbon Determination
cervus | Example real-life data - Cervus in Yukon and Alaska
equus | Example real-life data - Equus in Yukon and Alaska
FindPosteriorMeanRate | Find Posterior Mean Rate of Sample Occurrence for Poisson Process Model
FindPredictiveCalendarAgeDensity | Find Predictive Estimate of Shared Calendar Age Density from Bayesian Non-Parametric DPMM Output
FindSummedProbabilityDistribution | Find the summed probability distribution (SPD) for a set of radiocarbon observations
GenerateOxcalCode | Outputs code suitable for running in OxCal from a series of radiocarbon determinations
human | Example real-life data - Humans in Yukon and Alaska
intcal04 | IntCal04 calibration curve
intcal09 | IntCal09 calibration curve
intcal13 | IntCal13 calibration curve
intcal20 | IntCal20 calibration curve
intcal98 | IntCal98 calibration curve
InterpolateCalibrationCurve | Interpolate a calibration curve at a set of calendar ages
kerr | Example real-life data - Irish Rath
mammuthus | Example real-life data - Mammuthus in Yukon and Alaska
PlotCalendarAgeDensityIndividualSample | Plot Posterior Calendar Age Estimate for an Individual Determination after Joint Calibration
PlotConvergenceData | Plot KL Divergence of Predictive Density to Assess Convergence of Bayesian Non-Parametric DPMM Sampler
PlotGelmanRubinDiagnosticMultiChain | Plot Histogram of the Gelman-Rubin Convergence Diagnostic for Multiple Independent MCMC Chains
PlotGelmanRubinDiagnosticSingleChain | Plot Histogram of the Gelman-Rubin Convergence Diagnostic for a Single MCMC Chain
PlotNumberOfClusters | Plot Number of Calendar Age Clusters Estimated in Bayesian Non-Parametric DPMM Output
PlotNumberOfInternalChanges | Plot Number of Changepoints in Rate of Sample Occurrence for Poisson Process Model
PlotPosteriorChangePoints | Plot Calendar Ages of Changes in Rate of Sample Occurrence for Poisson Process Model
PlotPosteriorHeights | Plot Heights of Segments in Rate of Sample Occurrence for Poisson Process Model
PlotPosteriorMeanRate | Plot Posterior Mean Rate of Sample Occurrence for Poisson Process Model
PlotPredictiveCalendarAgeDensity | Plot Predictive Estimate of Shared Calendar Age Density from Bayesian Non-Parametric DPMM Output
PlotRateIndividualRealisation | Plot Individual Realisations of Posterior Rate of Sample Occurrence for Poisson Process Model
PolyaUrnBivarDirichlet | Calibrate and Summarise Multiple Radiocarbon Samples via a Bayesian Non-Parametric DPMM (with Polya Urn Updating)
PPcalibrate | Model Occurrence of Multiple Radiocarbon Samples as a Variable-Rate Poisson Process
pp_uniform_phase | Example artificial data - Uniform Phase
shcal04 | SHCal04 calibration curve
shcal13 | SHCal13 calibration curve
shcal20 | SHCal20 calibration curve
two_normals | Example artificial data - Mixture of Normal Phases
WalkerBivarDirichlet | Calibrate and Summarise Multiple Radiocarbon Samples via a Bayesian Non-Parametric DPMM (with Walker Updating)