Type: Package
Package: bayou
Title: Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies
Version: 2.3.2
Date: 2026-02-04
Authors@R: c(
    person("Josef C.", "Uyeda", ,"juyeda@vt.edu", role = c("aut", "cre"),
    	comment = c(ORCID = "0000-0003-4624-9680")),
    person("Jon", "Eastman", role = "ctb"),
    person("Luke", "Harmon", , "lukeh@uidaho.edu", role = "ctb", 
    	comment = c(ORCID = "0000-0002-4985-5750")), 
    person("Abhishek", "Hari", , "abhihari010@vt.edu", role = "ctb")
    )
Maintainer: Josef C. Uyeda <juyeda@vt.edu>
Description: Fits and simulates multi-optima Ornstein-Uhlenbeck models to phylogenetic comparative data using
    Bayesian reversible-jump methods. See Uyeda and Harmon (2014) <DOI:10.1093/sysbio/syu057>. 
License: GPL (>= 2)
Depends: ape (>= 3.0-6), coda, geiger(>= 2.0), phytools, R (>= 2.15.0)
Imports: assertthat, denstrip, fitdistrplus, foreach, graphics,
        grDevices, MASS, Matrix, mnormt, Rcpp (>= 0.10.3), stats
Suggests: doParallel, testthat
LinkingTo: Rcpp, RcppArmadillo
Encoding: UTF-8
RoxygenNote: 7.3.2
NeedsCompilation: yes
Packaged: 2026-02-11 17:53:47 UTC; juyeda
Author: Josef C. Uyeda [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-4624-9680>),
  Jon Eastman [ctb],
  Luke Harmon [ctb] (ORCID: <https://orcid.org/0000-0002-4985-5750>),
  Abhishek Hari [ctb]
Repository: CRAN
Date/Publication: 2026-02-13 17:50:15 UTC
Built: R 4.6.0; x86_64-apple-darwin20; 2026-04-28 14:42:29 UTC; unix
Archs: bayou.so.dSYM
