# Statistical Modeling of Animal Movements

## Documentation for package ‘smam’ version 0.7.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

smam-package | smam: Statistical Modeling of Animal Movements
approxNormalOrder | Auxiliary for Preparing Discrete Distribution used to approximating Standard Normal Distribution
approxNormalOrder2 | Auxiliary for Preparing Discrete Distribution used to approximating Standard Normal Distribution
dtm | Density for Time Spent in Moving or Resting
dtr | Density for Time Spent in Moving or Resting
estimate | Estimate Result of smam Estimators
estimate.smam_bmme | Estimate Result of smam Estimators
estimate.smam_mm | Estimate Result of smam Estimators
estimate.smam_mr | Estimate Result of smam Estimators
estimate.smam_mrh | Estimate Result of smam Estimators
estimate.smam_mrme | Estimate Result of smam Estimators
estVarMM | Fit a Moving-Moving Model with 2 Embedded Brownian Motion
estVarMRMEnaive_Godambe | Variance matrix of estimators from moving-resting process with measurement error
estVarMRMEnaive_pBootstrap | Variance matrix of estimators from moving-resting process with measurement error
estVarMRME_Godambe | Variance matrix of estimators from moving-resting process with measurement error
estVarMRME_pBootstrap | Variance matrix of estimators from moving-resting process with measurement error
f109 | GPS data of f109
f109raw | GPS data of f109 (raw format)
fitBMME | Fit a Brownian Motion with Measurement Error
fitBmme | Fit a Brownian Motion with Measurement Error
fitMM | Fit a Moving-Moving Model with 2 Embedded Brownian Motion
fitMovRes | Fit a Moving-Resting Model with Embedded Brownian Motion
fitMR | Fit a Moving-Resting Model with Embedded Brownian Motion
fitMRH | Fit a Moving-Resting-Handling Model with Embedded Brownian Motion
fitMRME | Fit a Moving-Resting Model with Measurement Error
fitMRMEapprox | Fit a Moving-Resting Model with Measurement Error
fitMRME_naive | Fit a Moving-Resting Model with Measurement Error
fitPartialViterbiMR | Estimation of states at each time point with Moving-Resting Process
fitPartialViterbiMRH | Estimation of states at each time point with Moving-Resting-Handling Process
fitStateMR | Estimation of states at each time point with Moving-Resting Process
fitStateMRH | Estimation of states at each time point with Moving-Resting-Handling Process
fitViterbiMR | Estimation of states at each time point with Moving-Resting Process
fitViterbiMRH | Estimation of states at each time point with Moving-Resting-Handling Process
integr.control | Auxiliary for Controlling Numerical Integration
rBB | Sampling from a Brownian bridge path give a grid time
rBMME | Sampling from Brown Motion with Measurement Error
rBmme | Sampling from Brown Motion with Measurement Error
rMM | Sampling from a Moving-Moving Process with 2 Embedded Brownian Motion
rMovRes | Sampling from a Moving-Resting Process with Embedded Brownian Motion
rMR | Sampling from a Moving-Resting Process with Embedded Brownian Motion
rMRB | Sampling from a Moving-Resting bridge
rMRH | Sampling from a Moving-Resting-Handling Process with Embedded Brownian Motion
rMRME | Sampling from a Moving-Resting Process with Embedded Brownian Motion
seasonFilter | Subsetting data during given season for each year (seasonal analysis toolbox)
smam | smam: Statistical Modeling of Animal Movements
transfData | Transfer raw dataset to the standard dataset (seasonal analysis toolbox)
vcov | Variance-Covariance Matrix of smam Estimators
vcov.smam_bmme | Variance-Covariance Matrix of smam Estimators
vcov.smam_mm | Variance-Covariance Matrix of smam Estimators
vcov.smam_mr | Variance-Covariance Matrix of smam Estimators
vcov.smam_mrh | Variance-Covariance Matrix of smam Estimators
vcov.smam_mrme | Variance-Covariance Matrix of smam Estimators