# Vignettes and other documentation

## Vignettes from package 'phangorn'

phangorn::AdvancedFeatures |  | Markov models and transition rate matrices | HTML | source | R code
phangorn::Ancestral |  | Ancestral Sequence Reconstruction | HTML | source | R code
phangorn::IntertwiningTreesAndNetworks |  | Intertwining phylogenetic trees and networks: R Example Script | HTML | source | R code
phangorn::MLbyHand |  | Maximum likelihood by hand | HTML | source | R code
phangorn::Morphological |  | Phylogenetic trees from morphological data | HTML | source | R code
phangorn::Networx |  | Splits and Networx | HTML | source | R code
phangorn::Trees |  | Estimating phylogenetic trees with phangorn | HTML | source | R code