# Differential Gene Expression (DGE) Analysis Results Data Object

## Documentation for package ‘DGEobj’ version 1.1.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

DGEobj-package | DGEobj Package Overview
addItem | Add a data item
addItems | Add multiple data items
annotateDGEobj | Add annotations
as.list.DGEobj | Cast as a simple list
baseType | Get the baseType of an internal data item
baseTypes | Get a list of the available baseTypes
dim.DGEobj | Get the "assay" dimensions (row/genes by col/samples)
dimnames.DGEobj | Get the "assay" names (row/genes by col/samples)
getAttributes | Get all attributes
getBaseType | Retrieve data items by baseType
getItem | Retrieve a data item by name
getItems | Retrieve multiple data items by name
getType | Retrieve data items by type
initDGEobj | Initialize with base data (primaryAssayData, row annotations, col annotations)
initDGEobjDef | Instantiate a class DGEobjDef object.
inventory | Retrieve the object inventory
newType | Add a new type definition to a DGEobj
print.DGEobj | Print the Inventory
resetDGEobj | Reset to original data
rmItem | Removes a named data item
setAttributes | Set attributes
showAttributes | Print attributes
showMeta | Retrieve the Key/Value metadata attributes that have a character value and length of 1
showTypes | Returns and prints the list of all defined types
subset.DGEobj | Subset internal row or column data
[.DGEobj | Subset with square brackets