Package: BayesianPlatformDesignTimeTrend
Title: Simulate and Analyse Bayesian Platform Trial with Time Trend
Version: 1.2.3
Author: Ziyan Wang [aut, cre],
  David Woods [ctb]
Maintainer: Ziyan Wang <zw7g20@soton.ac.uk>
Authors@R: 
	c(person(given = "Ziyan",
           family = "Wang",
           role = c("aut", "cre"),
           email = "zw7g20@soton.ac.uk"),
  	person(given = "David",
           family = "Woods",
           role = c("ctb"),
           email = "D.Woods@southampton.ac.uk"))
Description: Simulating the sequential multi-arm multi-stage or platform trial with Bayesian approach using the 'rstan' package, which provides the R interface for the Stan. 
    This package supports fixed ratio and Bayesian adaptive randomization approaches for randomization. 
    Additionally, it allows for the study of time trend problems in platform trials. 
    There are demos available for a multi-arm multi-stage trial with two different null scenarios, as well as for Bayesian trial cutoff screening.
    The Bayesian adaptive randomisation approaches are described in:
    Trippa et al. (2012) <doi:10.1200/JCO.2011.39.8420> and
    Wathen et al. (2017) <doi:10.1177/1740774517692302>.
    The randomisation algorithm is described in: 
    Zhao W <doi:10.1016/j.cct.2015.06.008>.
    The analysis methods of time trend effect in platform trial are described in:
    Saville et al. (2022) <doi:10.1177/17407745221112013> and
    Bofill Roig et al. (2022) <doi:10.1186/s12874-022-01683-w>.
URL: https://github.com/ZXW834/BayesianPlatformDesignTimeTrend
BugReports: https://github.com/ZXW834/BayesianPlatformDesignTimeTrend/issues
Encoding: UTF-8
RoxygenNote: 7.2.3
Biarch: true
Depends: R (>= 4.0.0), rstan (>= 2.32.1)
Imports: BiocManager (>= 1.30.19), boot (>= 1.3-28), doParallel (>=
        1.0.17), foreach (>= 1.5.1), ggplot2 (>= 3.4.0), ggpubr (>=
        0.4.0), iterators (>= 1.0.13), laGP (>= 1.5-9), lhs (>= 1.1.6),
        matrixStats (>= 0.61.0), methods, RColorBrewer (>= 1.1-3), Rcpp
        (>= 0.12.0), RcppParallel (>= 5.0.1), reshape (>= 0.8.8),
        rstantools (>= 2.3.1.1), stringr (>= 1.4.0)
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0),
        RcppParallel (>= 5.0.1), StanHeaders (>= 2.26.0), rstan (>=
        2.26.1)
SystemRequirements: GNU make
License: MIT + file LICENSE
Suggests: rmarkdown, knitr
VignetteBuilder: knitr
LazyData: true
NeedsCompilation: yes
Packaged: 2023-12-07 10:11:18 UTC; ziyanwang
Repository: CRAN
Date/Publication: 2023-12-07 11:00:02 UTC
Built: R 4.5.0; x86_64-apple-darwin20; 2025-01-31 13:33:53 UTC; unix
Archs: BayesianPlatformDesignTimeTrend.so.dSYM
