# Sum of Single Effects Linear Regression

## Documentation for package ‘susieR’ version 0.14.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

coef.susie | Extract regression coefficients from susie fit
compute_ss | Compute sufficient statistics for input to 'susie_suff_stat'
compute_suff_stat | Compute sufficient statistics for input to 'susie_suff_stat'
estimate_s_rss | Estimate s in 'susie_rss' Model Using Regularized LD
FinemappingConvergence | Simulated Fine-mapping Data with Convergence Problem.
get_cs_correlation | Get Correlations Between CSs, using Variable with Maximum PIP From Each CS
kriging_rss | Compute Distribution of z-scores of Variant j Given Other z-scores, and Detect Possible Allele Switch Issue
N2finemapping | Simulated Fine-mapping Data with Two Effect Variables
N3finemapping | Simulated Fine-mapping Data with Three Effect Variables.
predict.susie | Predict outcomes or extract coefficients from susie fit.
print.summary.susie | Summarize Susie Fit.
summary.susie | Summarize Susie Fit.
SummaryConsistency | Simulated Fine-mapping Data with LD matrix From Reference Panel.
susie | Sum of Single Effects (SuSiE) Regression
susie_auto | Attempt at Automating SuSiE for Hard Problems
susie_get_cs | Inferences From Fitted SuSiE Model
susie_get_lfsr | Inferences From Fitted SuSiE Model
susie_get_niter | Inferences From Fitted SuSiE Model
susie_get_objective | Inferences From Fitted SuSiE Model
susie_get_pip | Inferences From Fitted SuSiE Model
susie_get_posterior_mean | Inferences From Fitted SuSiE Model
susie_get_posterior_samples | Inferences From Fitted SuSiE Model
susie_get_posterior_sd | Inferences From Fitted SuSiE Model
susie_get_prior_variance | Inferences From Fitted SuSiE Model
susie_get_residual_variance | Inferences From Fitted SuSiE Model
susie_init_coef | Initialize a susie object using regression coefficients
susie_plot | SuSiE Plots.
susie_plot_changepoint | Plot changepoint data and susie fit using ggplot2
susie_plot_iteration | SuSiE Plots.
susie_rss | Sum of Single Effects (SuSiE) Regression using Summary Statistics
susie_suff_stat | Sum of Single Effects (SuSiE) Regression
susie_trendfilter | Apply susie to trend filtering (especially changepoint problems), a type of non-parametric regression.
univariate_regression | Perform Univariate Linear Regression Separately for Columns of X