%%% Main software references (JSS papers)

@Article{meyer.etal2017,
  author = {Sebastian Meyer and Leonhard Held and Michael H{\"o}hle},
  journal = {Journal of Statistical Software},
  title = {Spatio-temporal analysis of epidemic phenomena using the {R} package \pkg{surveillance}},
  year = {2017},
  number = {11},
  pages = {1--55},
  volume = {77},
  doi = {10.18637/jss.v077.i11},
  annote = {General software reference for the spatio-temporal modeling frameworks}
}

@Article{salmon.etal2016,
  author = {Ma{\"e}lle Salmon and Dirk Schumacher and Michael H{\"o}hle},
  journal = {Journal of Statistical Software},
  title = {Monitoring count time series in {R}: Aberration detection in public health surveillance},
  year = {2016},
  number = {10},
  pages = {1--35},
  volume = {70},
  doi = {10.18637/jss.v070.i10},
  annote = {General software reference for the monitoring functionality}
}

%%% hhh4()

@Article{held-etal-2005,
  author = {Leonhard Held and Michael H{\"o}hle and Mathias Hofmann},
  title = {A statistical framework for the analysis of multivariate infectious disease surveillance counts},
  journal = {Statistical Modelling},
  year = {2005},
  volume = {5},
  number = {3},
  pages = {187--199},
  doi = {10.1191/1471082X05st098oa},
  annote = {Seminal paper introducing the "HHH" modelling framework}
}

@Article{paul-etal-2008,
  author = {Michaela Paul and Leonhard Held and Andr{\'e} Michael Toschke},
  title = {Multivariate modelling of infectious disease surveillance data},
  journal = {Statistics in Medicine},
  year = {2008},
  volume = {27},
  number = {29},
  pages = {6250--6267},
  doi = {10.1002/sim.3440},
  annote = {Multivariate HHH models (without random effects)}
}

@Article{paul-held-2011,
  author = {Michaela Paul and Leonhard Held},
  title = {Predictive assessment of a non-linear random effects model for multivariate time series of infectious disease counts},
  journal = {Statistics in Medicine},
  year = {2011},
  volume = {30},
  number = {10},
  pages = {1118--1136},
  doi = {10.1002/sim.4177},
  annote = {Multivariate `hhh4()` with random effects}
}

@Article{meyer.held2014,
  author = {Sebastian Meyer and Leonhard Held},
  title = {Power-law models for infectious disease spread},
  journal = {The Annals of Applied Statistics},
  year = {2014},
  volume = {8},
  number = {3},
  pages = {1612--1639},
  doi = {10.1214/14-AOAS743},
  annote = {Spatial power-law models with `hhh4()` or `twinstim()`}
}

%%% twinSIR()

@Article{hoehle2009,
  author = {Michael H{\"o}hle},
  title = {Additive-multiplicative regression models for spatio-temporal epidemics},
  journal = {Biometrical Journal},
  year = {2009},
  volume = {51},
  number = {6},
  pages = {961--978},
  doi = {10.1002/bimj.200900050},
  annote = {`twinSIR()`}
}

%%% twinstim()

@Article{meyer.etal2012,
  author = {Sebastian Meyer and Johannes Elias and Michael H{\"o}hle},
  title = {A space-time conditional intensity model for invasive meningococcal disease occurrence},
  journal = {Biometrics},
  year = {2012},
  volume = {68},
  number = {2},
  pages = {607--616},
  doi = {10.1111/j.1541-0420.2011.01684.x},
  annote = {`twinstim()`}
}

@Article{meyer.etal2016,
  author = {Sebastian Meyer and Ingeborg Warnke and Wulf R{\"o}ssler and Leonhard Held},
  title = {Model-based testing for space-time interaction using point processes: An application to psychiatric hospital admissions in an urban area},
  journal = {Spatial and Spatio-temporal Epidemiology},
  year = {2016},
  volume = {17},
  pages = {15--25},
  doi = {10.1016/j.sste.2016.03.002},
  annote = {`knox()` and `epitest()`}
}

%%% algo.*()

@Article{hoehle-2007,
  title = {{surveillance}: An {R} package for the monitoring of infectious diseases},
  author = {Michael H{\"o}hle},
  journal = {Computational Statistics},
  year = {2007},
  volume = {22},
  number = {4},
  pages = {571--582},
  doi = {10.1007/s00180-007-0074-8},
  annote = {Outbreak detection using `algo.call()`}
}

@Article{hoehle.paul2008,
  author = {Michael H{\"o}hle and Michaela Paul},
  journal = {Computational Statistics \& Data Analysis},
  title = {Count data regression charts for the monitoring of surveillance time series},
  year = {2008},
  number = {9},
  pages = {4357--4368},
  volume = {52},
  doi = {10.1016/j.csda.2008.02.015},
  annote = {`glrnb()` and `glrpois()`}
}

%%% boda()

@Article{manitz.hoehle2013,
  author = {Juliane Manitz and Michael H{\"o}hle},
  title = {Bayesian outbreak detection algorithm for monitoring reported cases of campylobacteriosis in {Germany}},
  journal = {Biometrical Journal},
  year = {2013},
  volume = {55},
  number = {4},
  pages = {509--526},
  doi = {10.1002/bimj.201200141},
  annote = {`boda()`}
}

@Article{salmon.etal2015,
  author = {Ma{\"e}lle Salmon and Dirk Schumacher and Klaus Stark and Michael H{\"o}hle},
  title = {Bayesian outbreak detection in the presence of reporting delays},
  journal = {Biometrical Journal},
  year = {2015},
  volume = {57},
  number = {6},
  pages = {1051--1067},
  doi = {10.1002/bimj.201400159},
  annote = {`bodaDelay()`}
}

%%% nowcast()

@Article{hoehle.anderheiden2014,
  title = {{Bayesian} nowcasting during the {STEC} {O104:H4} outbreak in {Germany}, 2011},
  author = {Michael H{\"o}hle and Matthias {an der Heiden}},
  journal = {Biometrics},
  year = {2014},
  volume = {70},
  number = {4},
  pages = {993--1002},
  doi = {10.1111/biom.12194},
  annote = {`nowcast()`}
}
