# Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for GWAS

## Documentation for package ‘mrMLM’ version 5.0.1

- DESCRIPTION file.

## Help Pages

33-16 | Genotype of real data
<phenotype> | Phenotype dataset
A4226 | Genotype of real data
chrom | Genotype data
Chromosome | Final result used to draw manhattan plot.
DoData | process raw data
FASTmrEMMA | To perform GWAS with FASTmrEMMA method
FASTmrMLM | To perform GWAS with FASTmrMLM method
Gen | Genotype data
Genotype | Genotype of real data
inputData | Input data which have been transformed
ISIS | To perform GWAS with ISIS EM-BLASSO method
LOD.score | Final result used to draw manhattan plot.
mrMLM | Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for GWAS
mrMLMFun | To perform GWAS with mrMLM method
MultiManhattan | Drawing multi-locus Manhattan plot
multiplication_speed | Matrix multiplication acceleration algorithm.
Nov-38 | Genotype of real data
Phe | Phenotype dataset
Phenotype | Phenotype of real data
pKWmEB | To perform GWAS with pKWmEB method
pLARmEB | To perform GWAS with pLARmEB method
pos | Genotype data
QTN.effect | Final result used to draw manhattan plot.
ReadData | read raw data
rep-1 | Phenotype dataset
rep-2 | Phenotype dataset
rep-3 | Phenotype dataset
ResultFinal | Final result used to draw manhattan plot.
ResultIntermediate | Intermediate result used to draw manhattan plot.
rs# | Genotype data
RS. | Intermediate result used to draw manhattan plot.
Trait.ID | Intermediate result used to draw manhattan plot.
Trait.name | Intermediate result used to draw manhattan plot.
trait1 | Phenotype of real data
trait2 | Phenotype of real data
trait3 | Phenotype of real data