# Junction Tree Inference

## Documentation for package ‘jti’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

jti-package | jti: Junction Tree Inference
asia | Asia
asia2 | Asia2
bnfit_to_cpts | bnfit to cpts
compile | Compile information
compile.cpt_list | Compile information
cpt_list | Conditional probability list
cpt_list.data.frame | Conditional probability list
cpt_list.list | Conditional probability list
dim_names | Various getters
dim_names.charge | Various getters
dim_names.cpt_list | Various getters
dim_names.jt | Various getters
get_cliques | Return the cliques of a junction tree
get_cliques.charge | Return the cliques of a junction tree
get_cliques.jt | Return the cliques of a junction tree
get_cliques.pot_list | Return the cliques of a junction tree
get_clique_root | Return the cliques of a junction tree
get_clique_root.jt | Return the cliques of a junction tree
get_clique_root_idx | Return the cliques of a junction tree
get_clique_root_idx.jt | Return the cliques of a junction tree
get_graph | Get graph
get_graph.charge | Get graph
get_graph.cpt_list | Get graph
get_triang_graph | Get triangulated graph
has_inconsistencies | Various getters
has_inconsistencies.charge | Various getters
has_inconsistencies.jt | Various getters
initialize | Initialize
initialize.charge | Initialize
jt | Junction Tree
jt.charge | Junction Tree
jti | jti: Junction Tree Inference
jt_leaves | Query Parents or Leaves in a Junction Tree
jt_leaves.jt | Query Parents or Leaves in a Junction Tree
jt_nbinary_ops | Number of Binary Operations
jt_nbinary_ops.triangulation | Number of Binary Operations
jt_parents | Query Parents or Leaves in a Junction Tree
jt_parents.jt | Query Parents or Leaves in a Junction Tree
mpd | Maximal Prime Decomposition
mpd.cpt_list | Maximal Prime Decomposition
mpd.matrix | Maximal Prime Decomposition
mpe | Most Probable Explanation
mpe.jt | Most Probable Explanation
names.charge | Various getters
names.cpt_list | Various getters
names.jt | Various getters
plot.charge | A plot method for junction trees
plot.jt | A plot method for junction trees
pot_list | A check and extraction of clique potentials from a Markov random field to be used in the junction tree algorithm
pot_list.data.frame | A check and extraction of clique potentials from a Markov random field to be used in the junction tree algorithm
print.charge | A print method for compiled objects
print.cpt_list | A print method for cpt lists
print.jt | A print method for junction trees
propagate | Propagation of junction trees
propagate.jt | Propagation of junction trees
query_belief | Query probabilities
query_belief.jt | Query probabilities
query_evidence | Query Evidence
query_evidence.jt | Query Evidence
send_messages | Send Messages in a Junction Tree
set_evidence | Enter Evidence
set_evidence.charge | Enter Evidence
set_evidence.jt | Enter Evidence
sim_data_from_bn | Simulate data from a Bayesian network
sim_data_from_dmrf | Simulate data from a decomposable discrete markov random field
triangulate | Triangulate a Bayesian network
triangulate.cpt_list | Triangulate a Bayesian network