dimRed-package	dimRed-package
as.data.frame	as.data.frame
as.data.frame,dimRedData-method	dimRedData-class
as.data.frame,dimRedResult-method	dimRedResult-class
as.dimRedData	as.dimRedData
as.dimRedData,formula-method	as.dimRedData
AUC_lnK_R_NX	AUC_lnK_R_NX-dimRedResult-method
AUC_lnK_R_NX,dimRedResult-method	AUC_lnK_R_NX-dimRedResult-method
cophenetic_correlation	cophenetic_correlation-dimRedResult-method
cophenetic_correlation,dimRedResult-method	cophenetic_correlation-dimRedResult-method
dataSetList	dataSets
dataSets	dataSets
DiffusionMaps	DiffusionMaps-class
DiffusionMaps-class	DiffusionMaps-class
dimRed	dimRed-package
dimRedData	dimRedData-class
dimRedData-class	dimRedData-class
dimRedMethod-class	dimRedMethod-class
dimRedMethodList	dimRedMethodList
dimRedQualityList	quality
dimRedResult	dimRedResult-class
dimRedResult-class	dimRedResult-class
distance_correlation	distance_correlation-dimRedResult-method
distance_correlation,dimRedResult-method	distance_correlation-dimRedResult-method
DrL	DrL-class
DrL-class	DrL-class
DRR	DRR-class
DRR-class	DRR-class
embed	embed
embed,ANY-method	embed
embed,dimRedData-method	embed
embed,formula-method	embed
FastICA	FastICA-class
FastICA-class	FastICA-class
FruchtermanReingold	FruchtermanReingold-class
FruchtermanReingold-class	FruchtermanReingold-class
getData	getData
getData,dimRedData-method	dimRedData-class
getDimRedData	getDimRedData
getDimRedData,dimRedResult-method	dimRedResult-class
getMeta	getMeta
getMeta,dimRedData-method	dimRedData-class
getNDim	getNDim
getNDim,dimRedResult-method	dimRedResult-class
getOrgData	getOrgData
getOrgData,dimRedResult-method	dimRedResult-class
getOtherData	getOtherData
getOtherData,dimRedResult-method	dimRedResult-class
getPars	getPars
getPars,dimRedResult-method	dimRedResult-class
getRotationMatrix	getRotationMatrix
HLLE	HLLE-class
HLLE-class	HLLE-class
installSuggests	installSuggests
inverse	dimRedResult-class
inverse,dimRedResult-method	dimRedResult-class
Isomap	Isomap-class
Isomap-class	Isomap-class
KamadaKawai	KamadaKawai-class
KamadaKawai-class	KamadaKawai-class
kPCA	kPCA-class
kPCA-class	kPCA-class
LCMC	LCMC-dimRedResult-method
LCMC,dimRedResult-method	LCMC-dimRedResult-method
loadDataSet	dataSets
makeKNNgraph	makeKNNgraph
maximize_correlation	maximize_correlation-dimRedResult-method
maximize_correlation,dimRedResult-method	maximize_correlation-dimRedResult-method
MDS	MDS-class
MDS-class	MDS-class
mean_R_NX	mean_R_NX-dimRedResult-method
mean_R_NX,dimRedResult-method	mean_R_NX-dimRedResult-method
mixColor1Ramps	mixColorRamps
mixColor2Ramps	mixColorRamps
mixColor3Ramps	mixColorRamps
mixColorRamps	mixColorRamps
ndims	ndims
ndims,dimRedData-method	dimRedData-class
ndims,dimRedResult-method	dimRedResult-class
nMDS	nMDS-class
nMDS-class	nMDS-class
NNMF	NNMF-class
NNMF-class	NNMF-class
nrow,dimRedData-method	dimRedData-class
PCA	PCA-class
PCA-class	PCA-class
PCA_L1	PCA_L1-class
PCA_L1-class	PCA_L1-class
plot	plot
plot,dimRedData,ANY-method	plot
plot,dimRedResult,ANY-method	plot
plot.dimRed	plot
plot.dimRedData	plot
plot.dimRedResult	plot
plot_R_NX	plot_R_NX
predict,dimRedResult-method	dimRedResult-class
print	print
print,dimRedResult-method	dimRedResult-class
quality	quality
quality,dimRedResult-method	quality
quality.dimRedResult	quality
Q_global	Q_global-dimRedResult-method
Q_global,dimRedResult-method	Q_global-dimRedResult-method
Q_local	Q_local-dimRedResult-method
Q_local,dimRedResult-method	Q_local-dimRedResult-method
Q_NX	Q_NX-dimRedResult-method
Q_NX,dimRedResult-method	Q_NX-dimRedResult-method
reconstruction_error	reconstruction_error-dimRedResult-method
reconstruction_error,dimRedResult-method	reconstruction_error-dimRedResult-method
reconstruction_rmse	reconstruction_rmse-dimRedResult-method
reconstruction_rmse,dimRedResult-method	reconstruction_rmse-dimRedResult-method
R_NX	R_NX-dimRedResult-method
R_NX,dimRedResult-method	R_NX-dimRedResult-method
total_correlation	total_correlation-dimRedResult-method
total_correlation,dimRedResult-method	total_correlation-dimRedResult-method
tSNE	tSNE-class
tSNE-class	tSNE-class
UMAP	UMAP-class
UMAP-class	UMAP-class
[,dimRedData,ANY,ANY,ANY-method	dimRedData-class
