@article{Kumar2022AFT,
	author = {Kumar, Sajal and Song, Mingzhou},
	doi = {10.1093/bioinformatics/btac206},
	journal = {Bioinformatics},
	month = {May},
	number = {10},
	pages = {2818--2825},
	title = {Overcoming biases in causal inference of molecular interactions.},
	volume = {38},
	year = {2022}
}

@inproceedings{Nguyen2020EFT,
	Author = {Hien H. Nguyen and Hua Zhong and Mingzhou Song},
	Booktitle = {Proceedings of the Twenty-Ninth International Joint Conference on Artificial Intelligence, {IJCAI-20}},
	Doi = {10.24963/ijcai.2020/372},
	Month = {July},
	Pages = {2683--2689},
	Title = {Optimality, accuracy, and efficiency of an exact functional test},
	Year = {2020}}

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	Address = {New York},
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@article{zhang2013deciphering,
	Author = {Yang Zhang and Mingzhou Song},
	Journal = {arXiv Molecular Networks},
	Pages = {arXiv:1311.2707},
	Title = {Deciphering interactions in causal networks without parametric assumptions},
	Url = {https://arxiv.org/abs/1311.2707},
	Year = {2013}}

@phdthesis{zhang2014nonparametric,
	Address = {Las Cruces, NM, USA},
	Author = {Yang Zhang},
	School = {Department of Computer Science, New Mexico State University},
	Title = {Nonparametric Statistical Methods for Biological Network Inference},
	Year = {2014}}

@phdthesis{nguyen2018modelfree,
	Address = {Las Cruces, NM, USA},
	Author = {Hien H. Nguyen},
	School = {Department of Computer Science, New Mexico State University},
	Title = {Inference of Functional Dependency via Asymmetric, Optimal, and Model-free Statistics},
	Year = {2018}}

@phdthesis{zhong2019modelfree,
	Address = {Las Cruces, NM, USA},
	Author = {Hua Zhong},
	School = {Department of Computer Science, New Mexico State University},
	Title = {Model-free Gene-to-zone Network Inference of Molecular Mechanisms in Biology},
	Year = {2019}}

@article{zhong2019eft,
	Author = {Hua Zhong and Mingzhou Song},
	Doi = {10.1109/TCBB.2018.2809743},
	Journal = {IEEE/ACM Transactions on Computational Biology and Bioinformatics},
	Number = {3},
	Pages = {818--826},
	Title = {A fast exact functional test for directional association and cancer biology applications},
	Volume = {16},
	Year = {2019a}}

@article{song2014hunting,
	Author = {Mingzhou Song and Yang Zhang and Alexia J Katzaroff and Bruce A Edgar and Laura Buttitta},
	Doi = {10.1093/nar/gku086},
	Journal = {Nucleic Acids Research},
	Number = {7},
	Pages = {e57},
	Title = {Hunting complex differential gene interaction patterns across molecular contexts},
	Volume = {42},
	Year = {2014}}

@article{zhang2015chinet,
	Author = {Yang Zhang and Z Lewis Liu and Mingzhou Song},
	Doi = {10.1093/nar/gkv358},
	Journal = {Nucleic Acids Research},
	Number = {9},
	Pages = {4393--4407},
	Title = {{ChiNet} uncovers rewired transcription subnetworks in tolerant yeast for advanced biofuels conversion},
	Volume = {43},
	Year = {2015}}

@article{sharma2017simulating,
	Author = {Ruby Sharma and Sajal Kumar and Hua Zhong and Mingzhou Song},
	Doi = {10.32614/RJ-2017-053},
	Journal = {The R Journal},
	Number = {2},
	Pages = {366--377},
	Title = {Simulating noisy, nonparametric, and multivariate discrete patterns},
	Volume = {9},
	Year = {2017}}

@inproceedings{KumarZSLS18,
	Address = {Madrid, Spain},
	Author = {Sajal Kumar and Hua Zhong and Ruby Sharma and Yiyi Li and Mingzhou Song},
	Booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine},
	Doi = {10.1109/BIBM.2018.8621502},
	Pages = {185--190},
	Title = {Scrutinizing functional interaction networks from {RNA}-binding proteins to their targets in cancer},
	Year = {2018}
}

@article{Zhong2019FANTOM5,
	Author = {Hua Zhong and Mingzhou Song},
	Doi = {10.1186/s12920-019-0565-9},
	Journal = {BMC Med Genomics},
	Number = {7},
	Pages = {129},
	Title = {Directional association test reveals high-quality putative cancer driver biomarkers including noncoding {RNA}s},
	Volume = {12},
	Year = {2019b}}

@article{Hill:2016fk,
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	Doi = {10.1038/nmeth.3773},
	Journal = {Nat Methods},
	Pages = {310--318},
	Title = {Inferring causal molecular networks: empirical assessment through a community-based effort.},
	Volume = {13},
	Year = {2016}}

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@article{Simon1966,
	Author = {Simon, H. A. and Rescher, N.},
	Journal = {Philosophy of Science},
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