add.array	add.array
add.combi	add.combi
add.diag	add.diag
add.diversity	add.diversity
add.fixed.effects	add.fixed.effects
add.founder.kinship	add.founder.kinship
alpha_to_beta	alpha_to_beta
analyze.bv	analyze.bv
analyze.population	analyze.population
bit.snps	bit.snps
bit.storing	bit.storing
breeding.diploid	breeding.diploid
breeding.intern	breeding.intern
breeding.intern1	breeding.intern1
breeding.intern2	breeding.intern2
breeding.intern3	breeding.intern3
breeding.intern4	breeding.intern4
breeding.intern5	breeding.intern5
breeding.intern6	breeding.intern6
breeding.intern7	breeding.intern7
breeding.intern8	breeding.intern8
bv.development	bv.development
bv.development.box	bv.development.box
bv.standardization	bv.standardization
calculate.bv	calculate.bv
cattle_chip	cattle_chip
check.parents	check.parents
chicken_chip	chicken_chip
clean.up	clean.up
codeOriginsR	codeOriginsR
combine.traits	combine.traits
computing.costs	computing.costs
computing.costs.cohorts	computing.costs.cohorts
computing.snps	computing.snps
computing.snps_single	computing.snps_single
creating.diploid	creating.diploid
creating.phenotypic.transform	creating.phenotypic.transform
creating.trait	creating.trait
decodeOriginsR	decodeOriginsR
demiraculix	demiraculix
derive.loop.elements	derive.loop.elements
diag.mobps	diag.mobps
edges.fromto	edges.fromto
edit_animal	edit_animal
effect.estimate.add	effect.estimate.add
effective.size	effective.size
epi	epi
exist.cohort	exist.cohort
ex_json	ex_json
ex_pop	ex_pop
find.chromo	find.chromo
find.snpbefore	find.snpbefore
founder.simulation	founder.simulation
generation.individual	generation.individual
get.admixture	get.admixture
get.age.point	get.age.point
get.allele.freq	get.allele.freq
get.bv	get.bv
get.bve	get.bve
get.class	get.class
get.cohorts	get.cohorts
get.cohorts.individual	get.cohorts.individual
get.computing.time	get.computing.time
get.creating.type	get.creating.type
get.culling.time	get.culling.time
get.culling.type	get.culling.type
get.cullingtime	get.cullingtime
get.database	get.database
get.death.point	get.death.point
get.dendrogram	get.dendrogram
get.dendrogram.heatmap	get.dendrogram.heatmap
get.dendrogram.trait	get.dendrogram.trait
get.distance	get.distance
get.effect.freq	get.effect.freq
get.effective.size	get.effective.size
get.fixed.effects.p	get.fixed.effects.p
get.geno	get.geno
get.geno.time	get.geno.time
get.genotyped	get.genotyped
get.genotyped.snp	get.genotyped.snp
get.haplo	get.haplo
get.id	get.id
get.index	get.index
get.infos	get.infos
get.is.first	get.is.first
get.is.last	get.is.last
get.litter	get.litter
get.litter.effect	get.litter.effect
get.maf	get.maf
get.map	get.map
get.ngen	get.ngen
get.nindi	get.nindi
get.npheno	get.npheno
get.ntrait	get.ntrait
get.pca	get.pca
get.pedigree	get.pedigree
get.pedigree.visual	get.pedigree.visual
get.pedigree2	get.pedigree2
get.pedigree3	get.pedigree3
get.pedigree_old	get.pedigree_old
get.pedmap	get.pedmap
get.pen	get.pen
get.pen.effect	get.pen.effect
get.pheno	get.pheno
get.pheno.off	get.pheno.off
get.pheno.off.count	get.pheno.off.count
get.pheno.single	get.pheno.single
get.pheno.time	get.pheno.time
get.phylogenetic.tree	get.phylogenetic.tree
get.plink	get.plink
get.pool	get.pool
get.pool.founder	get.pool.founder
get.qtl	get.qtl
get.qtl.effects	get.qtl.effects
get.qtl.variance	get.qtl.variance
get.recombi	get.recombi
get.reliability	get.reliability
get.selectionbve	get.selectionbve
get.selectionindex	get.selectionindex
get.sex	get.sex
get.size	get.size
get.snapshot	get.snapshot
get.snapshot.single	get.snapshot.single
get.time.point	get.time.point
get.trafo.p	get.trafo.p
get.trafo.p.single	get.trafo.p.single
get.trait.name	get.trait.name
get.uhat	get.uhat
get.variance	get.variance
get.variance.components	get.variance.components
get.vcf	get.vcf
group.diff	group.diff
inbreeding.emp	inbreeding.emp
inbreeding.exp	inbreeding.exp
insert.bv	insert.bv
insert.bve	insert.bve
insert.pheno	insert.pheno
insert.pheno.single	insert.pheno.single
json.simulation	json.simulation
kinship.development	kinship.development
kinship.emp	kinship.emp
kinship.emp.fast	kinship.emp.fast
kinship.emp.fast.between	kinship.emp.fast.between
kinship.exp	kinship.exp
ld.decay	ld.decay
maize_chip	maize_chip
matrix.posdef	matrix.posdef
merging.cohorts	merging.cohorts
merging.trait	merging.trait
miesenberger.index	miesenberger.index
miraculix	miraculix
mutation.intro	mutation.intro
new.base.generation	new.base.generation
OGC	OGC
ogc.mobps	ogc.mobps
optimize.cores	optimize.cores
pedigree.matrix	pedigree.matrix
pedigree.simulation	pedigree.simulation
pedmap.to.phasedbeaglevcf	pedmap.to.phasedbeaglevcf
pig_chip	pig_chip
plot.population	plot.population
recalculate.bv	recalculate.bv
recalculate.manual	recalculate.manual
recombination.function.haldane	recombination.function.haldane
renaming.cohort	renaming.cohort
rowMedian	rowMedian
scaling.relationship	scaling.relationship
set.age.point	set.age.point
set.class	set.class
set.default	set.default
set.mean.pool	set.mean.pool
set.time.point	set.time.point
sheep_chip	sheep_chip
sortd	sortd
ssGBLUP	ssGBLUP
summary.population	summary.population
vlist	vlist
write.pedigree	write.pedigree
